(4 nodes) Benzoate degradation network (Thermococcus chitonophagus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CUX77442.1	Nonspecific lipid-transfer protein (acethyl CoA synthetase). (388 aa)
	CUX77869.1	Methylmalonyl-CoA decarboxylase, gamma chain. (124 aa)
	CUX77870.1	Biotin carboxyl carrier protein of methylmalonyl-CoA decarboxylase. (146 aa)
	CUX77871.1	Methylmalonyl-CoA decarboxylase, beta chain. (400 aa)

Your Current Organism:

Thermococcus chitonophagus

NCBI taxonomy Id: 54262
Other names: DSM 10152, T. chitonophagus, strain GC74

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CUX77869.1	CUX77870.1	CHITON_1090	CHITON_1091	Methylmalonyl-CoA decarboxylase, gamma chain.	Biotin carboxyl carrier protein of methylmalonyl-CoA decarboxylase.	0.984
CUX77869.1	CUX77871.1	CHITON_1090	CHITON_1092	Methylmalonyl-CoA decarboxylase, gamma chain.	Methylmalonyl-CoA decarboxylase, beta chain.	0.994
CUX77870.1	CUX77869.1	CHITON_1091	CHITON_1090	Biotin carboxyl carrier protein of methylmalonyl-CoA decarboxylase.	Methylmalonyl-CoA decarboxylase, gamma chain.	0.984
CUX77870.1	CUX77871.1	CHITON_1091	CHITON_1092	Biotin carboxyl carrier protein of methylmalonyl-CoA decarboxylase.	Methylmalonyl-CoA decarboxylase, beta chain.	0.993
CUX77871.1	CUX77869.1	CHITON_1092	CHITON_1090	Methylmalonyl-CoA decarboxylase, beta chain.	Methylmalonyl-CoA decarboxylase, gamma chain.	0.994
CUX77871.1	CUX77870.1	CHITON_1092	CHITON_1091	Methylmalonyl-CoA decarboxylase, beta chain.	Biotin carboxyl carrier protein of methylmalonyl-CoA decarboxylase.	0.993