STRINGSTRING
yecS_6 yecS_6 glnP_3 glnP_3 tcyC_3 tcyC_3 fliY_8 fliY_8 artP artP gltK gltK yecS_4 yecS_4 AJF72241.1 AJF72241.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
yecS_6Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (231 aa)
glnP_3Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (250 aa)
tcyC_3ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (272 aa)
fliY_8Cysteine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 3 family. (269 aa)
artPArginine transporter ATP-binding subunit; With ArtMQJI transports arginine across the inner membrane; Derived by automated computational analysis using gene prediction method: Protein Homology. (241 aa)
gltKAmino acid ABC transporter permease; With GltJLPS and GadC for glutamate and GltJLP, DctA and DcuAB for aspartate is involved in the transport of glutamate and aspartate; Derived by automated computational analysis using gene prediction method: Protein Homology. (224 aa)
yecS_4Amino acid ABC transporter permease; With GltIKL is involved in the transport of glutamate and aspartate; Derived by automated computational analysis using gene prediction method: Protein Homology. (246 aa)
AJF72241.1Amino acid transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (303 aa)
Your Current Organism:
Raoultella ornithinolytica
NCBI taxonomy Id: 54291
Other names: ATCC 31898, CCUG 26769, CIP 103364, CIP 103576, DSM 7464, JCM 6096, Klebsiella ornithinolytica, Klebsiella sp. Yangling I2, NBRC 105727, NIH 90-72, R. ornithinolytica
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