(16 nodes) De novo protein folding, and Heat shock protein 70kD, C-terminal domain superfamily network (Histoplasma capsulatum H88)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	HCEG_01505	ER associated DnaJ chaperone. (352 aa)
	HCEG_01719	Hsp70-like protein; Belongs to the heat shock protein 70 family. (586 aa)
	HCEG_03131	DnaJ domain-containing protein. (431 aa)
	HCEG_02554	Uncharacterized protein. (772 aa)
	HCEG_02769	HSP 70 family protein. (1004 aa)
	HCEG_02776	Uncharacterized protein; Belongs to the ClpA/ClpB family. (925 aa)
	HCEG_03424	SHSP domain-containing protein; Belongs to the small heat shock protein (HSP20) family. (376 aa)
	HCEG_04631	Zuotin. (445 aa)
	HCEG_05478	Uncharacterized protein. (410 aa)
	HCEG_05122	Uncharacterized protein. (574 aa)
	HCEG_07337	Hsp70-like protein; Belongs to the heat shock protein 70 family. (639 aa)
	HCEG_06551	Hsp88-like protein. (664 aa)
	HCEG_06578	Uncharacterized protein; Belongs to the heat shock protein 70 family. (599 aa)
	HCEG_07633	Hsp70-like protein. (214 aa)
	HCEG_08136	J domain-containing protein. (363 aa)
	HCEG_08624	DnaK-type molecular chaperone bipA; Belongs to the heat shock protein 70 family. (676 aa)

Your Current Organism:

Histoplasma capsulatum H88

NCBI taxonomy Id: 544711
Other names: Ajellomyces capsulatus H88, H. capsulatum H88

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
HCEG_01505	HCEG_01719	F0U5K6	F0U6Y6	ER associated DnaJ chaperone.	Hsp70-like protein; Belongs to the heat shock protein 70 family.	0.805
HCEG_01505	HCEG_02554	F0U5K6	F0UCR3	ER associated DnaJ chaperone.	Uncharacterized protein.	0.582
HCEG_01505	HCEG_02769	F0U5K6	F0UDM3	ER associated DnaJ chaperone.	HSP 70 family protein.	0.725
HCEG_01505	HCEG_02776	F0U5K6	F0UDN0	ER associated DnaJ chaperone.	Uncharacterized protein; Belongs to the ClpA/ClpB family.	0.611
HCEG_01505	HCEG_03131	F0U5K6	F0UBR7	ER associated DnaJ chaperone.	DnaJ domain-containing protein.	0.950
HCEG_01505	HCEG_04631	F0U5K6	F0UHK5	ER associated DnaJ chaperone.	Zuotin.	0.557
HCEG_01505	HCEG_05122	F0U5K6	F0UKC0	ER associated DnaJ chaperone.	Uncharacterized protein.	0.658
HCEG_01505	HCEG_05478	F0U5K6	F0UHQ4	ER associated DnaJ chaperone.	Uncharacterized protein.	0.875
HCEG_01505	HCEG_06551	F0U5K6	F0UMJ2	ER associated DnaJ chaperone.	Hsp88-like protein.	0.842
HCEG_01505	HCEG_06578	F0U5K6	F0UMP6	ER associated DnaJ chaperone.	Uncharacterized protein; Belongs to the heat shock protein 70 family.	0.803
HCEG_01505	HCEG_07337	F0U5K6	F0UMD0	ER associated DnaJ chaperone.	Hsp70-like protein; Belongs to the heat shock protein 70 family.	0.790
HCEG_01505	HCEG_07633	F0U5K6	F0UR91	ER associated DnaJ chaperone.	Hsp70-like protein.	0.583
HCEG_01505	HCEG_08136	F0U5K6	F0USP4	ER associated DnaJ chaperone.	J domain-containing protein.	0.539
HCEG_01505	HCEG_08624	F0U5K6	F0UU32	ER associated DnaJ chaperone.	DnaK-type molecular chaperone bipA; Belongs to the heat shock protein 70 family.	0.829
HCEG_01719	HCEG_01505	F0U6Y6	F0U5K6	Hsp70-like protein; Belongs to the heat shock protein 70 family.	ER associated DnaJ chaperone.	0.805
HCEG_01719	HCEG_02554	F0U6Y6	F0UCR3	Hsp70-like protein; Belongs to the heat shock protein 70 family.	Uncharacterized protein.	0.777
HCEG_01719	HCEG_02776	F0U6Y6	F0UDN0	Hsp70-like protein; Belongs to the heat shock protein 70 family.	Uncharacterized protein; Belongs to the ClpA/ClpB family.	0.790
HCEG_01719	HCEG_03131	F0U6Y6	F0UBR7	Hsp70-like protein; Belongs to the heat shock protein 70 family.	DnaJ domain-containing protein.	0.939
HCEG_01719	HCEG_03424	F0U6Y6	F0UFV2	Hsp70-like protein; Belongs to the heat shock protein 70 family.	SHSP domain-containing protein; Belongs to the small heat shock protein (HSP20) family.	0.542
HCEG_01719	HCEG_04631	F0U6Y6	F0UHK5	Hsp70-like protein; Belongs to the heat shock protein 70 family.	Zuotin.	0.979