10 items (Histoplasma capsulatum H88) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	HCEG_01390	Nonspecific lipid-transfer protein; Belongs to the thiolase-like superfamily. Thiolase family. (458 aa)
	HCEG_00677	Polyubiquitin. (305 aa)
	HCEG_00250	Peroxisomal dehydratase. (308 aa)
	HCEG_00463	AB hydrolase-1 domain-containing protein. (354 aa)
	HCEG_01992	AT hook domain-containing protein. (376 aa)
	HCEG_03034	Peroxin 12. (516 aa)
	HCEG_03197	Peroxin 10. (217 aa)
	HCEG_02794	Acyl-CoA thioesterase II. (354 aa)
	HCEG_03906	Short chain dehydrogenase. (317 aa)
	HCEG_08365	Epoxide hydrolase. (398 aa)

Your Current Organism:

Histoplasma capsulatum H88

NCBI taxonomy Id: 544711
Other names: Ajellomyces capsulatus H88, H. capsulatum H88

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
HCEG_00250	HCEG_00463	F0U8D0	F0U9K4	Peroxisomal dehydratase.	AB hydrolase-1 domain-containing protein.	0.505
HCEG_00250	HCEG_01390	F0U8D0	F0U4Y5	Peroxisomal dehydratase.	Nonspecific lipid-transfer protein; Belongs to the thiolase-like superfamily. Thiolase family.	0.966
HCEG_00250	HCEG_01992	F0U8D0	F0U9V5	Peroxisomal dehydratase.	AT hook domain-containing protein.	0.658
HCEG_00250	HCEG_02794	F0U8D0	F0UDP8	Peroxisomal dehydratase.	Acyl-CoA thioesterase II.	0.655
HCEG_00250	HCEG_03034	F0U8D0	F0UB65	Peroxisomal dehydratase.	Peroxin 12.	0.672
HCEG_00250	HCEG_03197	F0U8D0	F0UC36	Peroxisomal dehydratase.	Peroxin 10.	0.646
HCEG_00250	HCEG_03906	F0U8D0	F0UEG1	Peroxisomal dehydratase.	Short chain dehydrogenase.	0.846
HCEG_00250	HCEG_08365	F0U8D0	F0UTC3	Peroxisomal dehydratase.	Epoxide hydrolase.	0.505
HCEG_00463	HCEG_00250	F0U9K4	F0U8D0	AB hydrolase-1 domain-containing protein.	Peroxisomal dehydratase.	0.505
HCEG_00463	HCEG_00677	F0U9K4	F0U5G7	AB hydrolase-1 domain-containing protein.	Polyubiquitin.	0.975
HCEG_00463	HCEG_01390	F0U9K4	F0U4Y5	AB hydrolase-1 domain-containing protein.	Nonspecific lipid-transfer protein; Belongs to the thiolase-like superfamily. Thiolase family.	0.888
HCEG_00463	HCEG_01992	F0U9K4	F0U9V5	AB hydrolase-1 domain-containing protein.	AT hook domain-containing protein.	0.978
HCEG_00463	HCEG_03034	F0U9K4	F0UB65	AB hydrolase-1 domain-containing protein.	Peroxin 12.	0.978
HCEG_00463	HCEG_03906	F0U9K4	F0UEG1	AB hydrolase-1 domain-containing protein.	Short chain dehydrogenase.	0.644
HCEG_00463	HCEG_08365	F0U9K4	F0UTC3	AB hydrolase-1 domain-containing protein.	Epoxide hydrolase.	0.888
HCEG_00677	HCEG_00463	F0U5G7	F0U9K4	Polyubiquitin.	AB hydrolase-1 domain-containing protein.	0.975
HCEG_00677	HCEG_01390	F0U5G7	F0U4Y5	Polyubiquitin.	Nonspecific lipid-transfer protein; Belongs to the thiolase-like superfamily. Thiolase family.	0.978
HCEG_00677	HCEG_01992	F0U5G7	F0U9V5	Polyubiquitin.	AT hook domain-containing protein.	0.670
HCEG_00677	HCEG_02794	F0U5G7	F0UDP8	Polyubiquitin.	Acyl-CoA thioesterase II.	0.650
HCEG_00677	HCEG_03034	F0U5G7	F0UB65	Polyubiquitin.	Peroxin 12.	0.654