STRINGSTRING
HCEG_04807 HCEG_04807 HCEG_08554 HCEG_08554 HCEG_08551 HCEG_08551 HCEG_07645 HCEG_07645 HCEG_06874 HCEG_06874 HCEG_06011 HCEG_06011 HCEG_05081 HCEG_05081 HCEG_03674 HCEG_03674 HCEG_03629 HCEG_03629 HCEG_03908 HCEG_03908 HCEG_03776 HCEG_03776 HCEG_02208 HCEG_02208 HCEG_00890 HCEG_00890 HCEG_00821 HCEG_00821 HCEG_00785 HCEG_00785
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
HCEG_04807Sm domain-containing protein. (228 aa)
HCEG_08554U1 snRNP-associated protein Usp106. (294 aa)
HCEG_08551FF domain-containing protein. (571 aa)
HCEG_07645U1 snRNP-associated protein Usp107. (759 aa)
HCEG_06874Sm domain-containing protein. (90 aa)
HCEG_06011WD40 repeat-containing protein. (1622 aa)
HCEG_05081GTP-binding protein. (263 aa)
HCEG_03674Small nuclear ribonucleoprotein Sm D2. (187 aa)
HCEG_03629U1 small nuclear ribonucleoprotein. (452 aa)
HCEG_03908Small nuclear ribonucleoprotein G. (78 aa)
HCEG_03776Small nuclear ribonucleoprotein U. (253 aa)
HCEG_02208Pre-mRNA-processing protein prp40. (827 aa)
HCEG_00890Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (113 aa)
HCEG_00821Pre-mRNA-processing factor 39. (595 aa)
HCEG_00785U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (242 aa)
Your Current Organism:
Histoplasma capsulatum H88
NCBI taxonomy Id: 544711
Other names: Ajellomyces capsulatus H88, H. capsulatum H88
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