37 items (Histoplasma capsulatum H88) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	HCEG_07351	Uncharacterized protein. (129 aa)
	HCEG_00516	FAD binding domain-containing protein. (499 aa)
	HCEG_00523	Uncharacterized protein. (431 aa)
	HCEG_01449	DNA-binding protein. (691 aa)
	HCEG_00663	Peptidyl-tRNA hydrolase. (214 aa)
	HCEG_00664	Uncharacterized protein. (272 aa)
	HCEG_01557	Karyopherin. (1095 aa)
	HCEG_00054	PKHD-type hydroxylase TPA1. (689 aa)
	HCEG_00091	Ubiquitin conjugating enzyme. (447 aa)
	HCEG_00118	26S protease regulatory subunit 7; Belongs to the AAA ATPase family. (439 aa)
	HCEG_01816	RBR-type E3 ubiquitin transferase. (578 aa)
	HCEG_00222	26S protease regulatory subunit 6B; Belongs to the AAA ATPase family. (422 aa)
	HCEG_00253	26S protease regulatory subunit 6A-B; Belongs to the AAA ATPase family. (464 aa)
	HCEG_01207	Ubiquitin-like domain-containing protein. (78 aa)
	HCEG_02033	26S protease regulatory subunit S10B; Belongs to the AAA ATPase family. (392 aa)
	HCEG_02149	TMF_TATA_bd domain-containing protein. (862 aa)
	HCEG_02255	Nefa_Nip30_N domain-containing protein. (253 aa)
	HCEG_03125	FAD binding domain-containing protein. (660 aa)
	HCEG_02404	Proteasome activator subunit 4. (250 aa)
	HCEG_02405	Proteasome activator subunit 4. (2188 aa)
	HCEG_02474	WD40 repeat-containing protein. (903 aa)
	HCEG_02562	RPN13_C domain-containing protein. (401 aa)
	HCEG_02671	Uncharacterized protein. (215 aa)
	HCEG_04540	U-box domain-containing protein. (284 aa)
	HCEG_03755	Glycerate kinase. (457 aa)
	HCEG_04021	26S protease regulatory subunit 4; Belongs to the AAA ATPase family. (455 aa)
	HCEG_03410	BTB domain-containing protein. (286 aa)
	HCEG_03497	WD40 repeat-containing protein. (616 aa)
	HCEG_04744	26S protease regulatory subunit 8; Belongs to the AAA ATPase family. (389 aa)
	HCEG_04854	Proteasome component. (192 aa)
	HCEG_04902	Cell cycle control protein. (598 aa)
	HCEG_09018	RBR-type E3 ubiquitin transferase. (632 aa)
	HCEG_08836	Uncharacterized protein. (69 aa)
	HCEG_08261	Ubiquitin carboxyl-terminal hydrolase. (570 aa)
	HCEG_08024	DUF1000 domain-containing protein. (229 aa)
	HCEG_06179	Lysophospholipase. (559 aa)
	HCEG_07343	Uncharacterized protein. (405 aa)

Your Current Organism:

Histoplasma capsulatum H88

NCBI taxonomy Id: 544711
Other names: Ajellomyces capsulatus H88, H. capsulatum H88

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
HCEG_00091	HCEG_00222	F0U747	F0U8A2	Ubiquitin conjugating enzyme.	26S protease regulatory subunit 6B; Belongs to the AAA ATPase family.	0.418
HCEG_00091	HCEG_00253	F0U747	F0U8D3	Ubiquitin conjugating enzyme.	26S protease regulatory subunit 6A-B; Belongs to the AAA ATPase family.	0.418
HCEG_00091	HCEG_00523	F0U747	F0U4K4	Ubiquitin conjugating enzyme.	Uncharacterized protein.	0.655
HCEG_00091	HCEG_01207	F0U747	F0U951	Ubiquitin conjugating enzyme.	Ubiquitin-like domain-containing protein.	0.608
HCEG_00091	HCEG_01816	F0U747	F0U7U2	Ubiquitin conjugating enzyme.	RBR-type E3 ubiquitin transferase.	0.672
HCEG_00091	HCEG_02033	F0U747	F0UA46	Ubiquitin conjugating enzyme.	26S protease regulatory subunit S10B; Belongs to the AAA ATPase family.	0.418
HCEG_00091	HCEG_02474	F0U747	F0UCI3	Ubiquitin conjugating enzyme.	WD40 repeat-containing protein.	0.553
HCEG_00091	HCEG_03497	F0U747	F0UGC9	Ubiquitin conjugating enzyme.	WD40 repeat-containing protein.	0.553
HCEG_00091	HCEG_04540	F0U747	F0UDW4	Ubiquitin conjugating enzyme.	U-box domain-containing protein.	0.716
HCEG_00091	HCEG_04902	F0U747	F0UJ38	Ubiquitin conjugating enzyme.	Cell cycle control protein.	0.553
HCEG_00118	HCEG_00222	F0U7H9	F0U8A2	26S protease regulatory subunit 7; Belongs to the AAA ATPase family.	26S protease regulatory subunit 6B; Belongs to the AAA ATPase family.	0.999
HCEG_00118	HCEG_00253	F0U7H9	F0U8D3	26S protease regulatory subunit 7; Belongs to the AAA ATPase family.	26S protease regulatory subunit 6A-B; Belongs to the AAA ATPase family.	0.999
HCEG_00118	HCEG_00516	F0U7H9	F0U4J7	26S protease regulatory subunit 7; Belongs to the AAA ATPase family.	FAD binding domain-containing protein.	0.455
HCEG_00118	HCEG_01207	F0U7H9	F0U951	26S protease regulatory subunit 7; Belongs to the AAA ATPase family.	Ubiquitin-like domain-containing protein.	0.802
HCEG_00118	HCEG_01449	F0U7H9	F0U596	26S protease regulatory subunit 7; Belongs to the AAA ATPase family.	DNA-binding protein.	0.600
HCEG_00118	HCEG_02033	F0U7H9	F0UA46	26S protease regulatory subunit 7; Belongs to the AAA ATPase family.	26S protease regulatory subunit S10B; Belongs to the AAA ATPase family.	0.999
HCEG_00118	HCEG_02404	F0U7H9	F0UC89	26S protease regulatory subunit 7; Belongs to the AAA ATPase family.	Proteasome activator subunit 4.	0.762
HCEG_00118	HCEG_02405	F0U7H9	F0UC90	26S protease regulatory subunit 7; Belongs to the AAA ATPase family.	Proteasome activator subunit 4.	0.762
HCEG_00118	HCEG_02474	F0U7H9	F0UCI3	26S protease regulatory subunit 7; Belongs to the AAA ATPase family.	WD40 repeat-containing protein.	0.638
HCEG_00118	HCEG_02562	F0U7H9	F0UCS1	26S protease regulatory subunit 7; Belongs to the AAA ATPase family.	RPN13_C domain-containing protein.	0.998