5 items (Histoplasma capsulatum H88) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	HCEG_07602	Snf1 kinase complex beta-subunit Gal83. (552 aa)
	HCEG_00790	C-x8-C-x5-C-x3-H zinc finger protein. (582 aa)
	HCEG_01607	Uncharacterized protein. (377 aa)
	HCEG_03647	Nuclear protein SNF4. (379 aa)
	HCEG_03648	Uncharacterized protein. (674 aa)

Your Current Organism:

Histoplasma capsulatum H88

NCBI taxonomy Id: 544711
Other names: Ajellomyces capsulatus H88, H. capsulatum H88

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
HCEG_00790	HCEG_03647	F0U637	F0UH85	C-x8-C-x5-C-x3-H zinc finger protein.	Nuclear protein SNF4.	0.860
HCEG_00790	HCEG_03648	F0U637	F0UH86	C-x8-C-x5-C-x3-H zinc finger protein.	Uncharacterized protein.	0.860
HCEG_01607	HCEG_03647	F0U663	F0UH85	Uncharacterized protein.	Nuclear protein SNF4.	0.860
HCEG_01607	HCEG_03648	F0U663	F0UH86	Uncharacterized protein.	Uncharacterized protein.	0.860
HCEG_03647	HCEG_00790	F0UH85	F0U637	Nuclear protein SNF4.	C-x8-C-x5-C-x3-H zinc finger protein.	0.860
HCEG_03647	HCEG_01607	F0UH85	F0U663	Nuclear protein SNF4.	Uncharacterized protein.	0.860
HCEG_03647	HCEG_07602	F0UH85	F0UR60	Nuclear protein SNF4.	Snf1 kinase complex beta-subunit Gal83.	0.975
HCEG_03648	HCEG_00790	F0UH86	F0U637	Uncharacterized protein.	C-x8-C-x5-C-x3-H zinc finger protein.	0.860
HCEG_03648	HCEG_01607	F0UH86	F0U663	Uncharacterized protein.	Uncharacterized protein.	0.860
HCEG_03648	HCEG_07602	F0UH86	F0UR60	Uncharacterized protein.	Snf1 kinase complex beta-subunit Gal83.	0.975
HCEG_07602	HCEG_03647	F0UR60	F0UH85	Snf1 kinase complex beta-subunit Gal83.	Nuclear protein SNF4.	0.975
HCEG_07602	HCEG_03648	F0UR60	F0UH86	Snf1 kinase complex beta-subunit Gal83.	Uncharacterized protein.	0.975