STRINGSTRING
HCEG_03016 HCEG_03016 HCEG_00390 HCEG_00390 HCEG_00890 HCEG_00890 HCEG_00018 HCEG_00018 HCEG_06392 HCEG_06392 HCEG_06482 HCEG_06482 HCEG_07484 HCEG_07484 HCEG_05598 HCEG_05598 LSM3 LSM3 HCEG_03674 HCEG_03674 HCEG_03960 HCEG_03960 HCEG_03908 HCEG_03908 LSM8 LSM8 HCEG_02336 HCEG_02336 HCEG_02225 HCEG_02225
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
HCEG_03016Pre-mRNA-splicing factor Ini1. (110 aa)
HCEG_00390Splicing factor subunit; Belongs to the SF3B5 family. (84 aa)
HCEG_00890Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (113 aa)
HCEG_00018Small nuclear ribonucleoprotein LSM2. (148 aa)
HCEG_06392Pre-mRNA processing factor. (233 aa)
HCEG_06482RNA binding domain-containing protein. (276 aa)
HCEG_07484Splicing factor 3B. (577 aa)
HCEG_05598Pre-mRNA branch site protein p14. (115 aa)
LSM3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (98 aa)
HCEG_03674Small nuclear ribonucleoprotein Sm D2. (187 aa)
HCEG_03960Uncharacterized protein. (399 aa)
HCEG_03908Small nuclear ribonucleoprotein G. (78 aa)
LSM8U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (94 aa)
HCEG_02336U1 zinc finger domain-containing protein. (313 aa)
HCEG_02225Pre-mRNA-processing factor 31. (616 aa)
Your Current Organism:
Histoplasma capsulatum H88
NCBI taxonomy Id: 544711
Other names: Ajellomyces capsulatus H88, H. capsulatum H88
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