8 items (Histoplasma capsulatum H88) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	HCEG_05849	CTD kinase subunit 3. (246 aa)
	HCEG_00264	Cyclin; Belongs to the cyclin family. (672 aa)
	HCEG_01107	GDSL Lipase/Acylhydrolase. (259 aa)
	HCEG_04268	Serine/threonine protein kinase bur-1. (554 aa)
	HCEG_05722	Uncharacterized protein. (719 aa)
	HCEG_07301	C-type cyclin. (395 aa)
	HCEG_06821	Cyclin; Belongs to the cyclin family. (301 aa)
	HCEG_06957	Meiotic mRNA stability protein kinase UME5. (428 aa)

Your Current Organism:

Histoplasma capsulatum H88

NCBI taxonomy Id: 544711
Other names: Ajellomyces capsulatus H88, H. capsulatum H88

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
HCEG_00264	HCEG_04268	F0U8E4	F0UG04	Cyclin; Belongs to the cyclin family.	Serine/threonine protein kinase bur-1.	0.999
HCEG_00264	HCEG_05849	F0U8E4	F0UJU6	Cyclin; Belongs to the cyclin family.	CTD kinase subunit 3.	0.789
HCEG_00264	HCEG_06821	F0U8E4	F0UNK1	Cyclin; Belongs to the cyclin family.	Cyclin; Belongs to the cyclin family.	0.789
HCEG_00264	HCEG_06957	F0U8E4	F0UP90	Cyclin; Belongs to the cyclin family.	Meiotic mRNA stability protein kinase UME5.	0.820
HCEG_00264	HCEG_07301	F0U8E4	F0UM94	Cyclin; Belongs to the cyclin family.	C-type cyclin.	0.834
HCEG_04268	HCEG_00264	F0UG04	F0U8E4	Serine/threonine protein kinase bur-1.	Cyclin; Belongs to the cyclin family.	0.999
HCEG_04268	HCEG_05722	F0UG04	F0UJ62	Serine/threonine protein kinase bur-1.	Uncharacterized protein.	0.909
HCEG_04268	HCEG_05849	F0UG04	F0UJU6	Serine/threonine protein kinase bur-1.	CTD kinase subunit 3.	0.945
HCEG_04268	HCEG_06821	F0UG04	F0UNK1	Serine/threonine protein kinase bur-1.	Cyclin; Belongs to the cyclin family.	0.438
HCEG_04268	HCEG_07301	F0UG04	F0UM94	Serine/threonine protein kinase bur-1.	C-type cyclin.	0.979
HCEG_05722	HCEG_04268	F0UJ62	F0UG04	Uncharacterized protein.	Serine/threonine protein kinase bur-1.	0.909
HCEG_05722	HCEG_05849	F0UJ62	F0UJU6	Uncharacterized protein.	CTD kinase subunit 3.	0.738
HCEG_05722	HCEG_06821	F0UJ62	F0UNK1	Uncharacterized protein.	Cyclin; Belongs to the cyclin family.	0.719
HCEG_05722	HCEG_06957	F0UJ62	F0UP90	Uncharacterized protein.	Meiotic mRNA stability protein kinase UME5.	0.752
HCEG_05849	HCEG_00264	F0UJU6	F0U8E4	CTD kinase subunit 3.	Cyclin; Belongs to the cyclin family.	0.789
HCEG_05849	HCEG_04268	F0UJU6	F0UG04	CTD kinase subunit 3.	Serine/threonine protein kinase bur-1.	0.945
HCEG_05849	HCEG_05722	F0UJU6	F0UJ62	CTD kinase subunit 3.	Uncharacterized protein.	0.738
HCEG_05849	HCEG_06821	F0UJU6	F0UNK1	CTD kinase subunit 3.	Cyclin; Belongs to the cyclin family.	0.442
HCEG_05849	HCEG_07301	F0UJU6	F0UM94	CTD kinase subunit 3.	C-type cyclin.	0.956
HCEG_06821	HCEG_00264	F0UNK1	F0U8E4	Cyclin; Belongs to the cyclin family.	Cyclin; Belongs to the cyclin family.	0.789