7 items (Histoplasma capsulatum H88) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	HCEG_02480	HMG box protein. (487 aa)
	HCEG_01354	BZIP domain-containing protein. (252 aa)
	HCEG_02985	Ubiquitin-like domain-containing protein. (152 aa)
	HCEG_02452	HMG box protein. (659 aa)
	HCEG_06683	Extracellular serine-rich protein. (217 aa)
	HCEG_07036	HMG box protein. (346 aa)
	HCEG_09115	C2H2 finger domain-containing protein. (632 aa)

Your Current Organism:

Histoplasma capsulatum H88

NCBI taxonomy Id: 544711
Other names: Ajellomyces capsulatus H88, H. capsulatum H88

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
HCEG_02452	HCEG_02480	F0UCG1	F0UCI9	HMG box protein.	HMG box protein.	0.634
HCEG_02452	HCEG_06683	F0UCG1	F0UN01	HMG box protein.	Extracellular serine-rich protein.	0.714
HCEG_02480	HCEG_02452	F0UCI9	F0UCG1	HMG box protein.	HMG box protein.	0.634
HCEG_02480	HCEG_06683	F0UCI9	F0UN01	HMG box protein.	Extracellular serine-rich protein.	0.709
HCEG_02480	HCEG_07036	F0UCI9	F0UPS6	HMG box protein.	HMG box protein.	0.626
HCEG_02480	HCEG_09115	F0UCI9	F0UVH3	HMG box protein.	C2H2 finger domain-containing protein.	0.626
HCEG_06683	HCEG_02452	F0UN01	F0UCG1	Extracellular serine-rich protein.	HMG box protein.	0.714
HCEG_06683	HCEG_02480	F0UN01	F0UCI9	Extracellular serine-rich protein.	HMG box protein.	0.709
HCEG_06683	HCEG_07036	F0UN01	F0UPS6	Extracellular serine-rich protein.	HMG box protein.	0.714
HCEG_06683	HCEG_09115	F0UN01	F0UVH3	Extracellular serine-rich protein.	C2H2 finger domain-containing protein.	0.714
HCEG_07036	HCEG_02480	F0UPS6	F0UCI9	HMG box protein.	HMG box protein.	0.626
HCEG_07036	HCEG_06683	F0UPS6	F0UN01	HMG box protein.	Extracellular serine-rich protein.	0.714
HCEG_09115	HCEG_02480	F0UVH3	F0UCI9	C2H2 finger domain-containing protein.	HMG box protein.	0.626
HCEG_09115	HCEG_06683	F0UVH3	F0UN01	C2H2 finger domain-containing protein.	Extracellular serine-rich protein.	0.714