14 items (Histoplasma capsulatum H88) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	HCEG_01354	BZIP domain-containing protein. (252 aa)
	HCEG_01365	Mating-type switching protein swi10. (361 aa)
	HCEG_01786	DNA damage-binding protein CMR1; DNA-binding protein that binds to both single- and double- stranded DNA. Binds preferentially to UV-damaged DNA. May be involved in DNA-metabolic processes. (541 aa)
	HCEG_02985	Ubiquitin-like domain-containing protein. (152 aa)
	HCEG_02439	Cell division control protein. (266 aa)
	HCEG_03978	Poly [ADP-ribose] polymerase. (617 aa)
	HCEG_04069	Pre-mRNA-splicing factor Cwc24. (826 aa)
	HCEG_04300	RING-1 protein. (121 aa)
	HCEG_03676	Nuclear pore complex subunit Nup192; Belongs to the cullin family. (2530 aa)
	HCEG_06376	Uncharacterized protein. (269 aa)
	HCEG_06518	BRCT domain-containing protein. (269 aa)
	HCEG_06937	DNA damage-binding protein 1a. (1201 aa)
	HCEG_07953	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism. (602 aa)
	HCEG_08325	DNA repair protein RAD1. (975 aa)

Your Current Organism:

Histoplasma capsulatum H88

NCBI taxonomy Id: 544711
Other names: Ajellomyces capsulatus H88, H. capsulatum H88

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
HCEG_01354	HCEG_01365	F0U4P5	F0U4Q6	BZIP domain-containing protein.	Mating-type switching protein swi10.	0.755
HCEG_01354	HCEG_01786	F0U4P5	F0U7F7	BZIP domain-containing protein.	DNA damage-binding protein CMR1; DNA-binding protein that binds to both single- and double- stranded DNA. Binds preferentially to UV-damaged DNA. May be involved in DNA-metabolic processes.	0.725
HCEG_01354	HCEG_02439	F0U4P5	F0UCE8	BZIP domain-containing protein.	Cell division control protein.	0.697
HCEG_01354	HCEG_03676	F0U4P5	F0UHB4	BZIP domain-containing protein.	Nuclear pore complex subunit Nup192; Belongs to the cullin family.	0.775
HCEG_01354	HCEG_03978	F0U4P5	F0UEN3	BZIP domain-containing protein.	Poly [ADP-ribose] polymerase.	0.696
HCEG_01354	HCEG_04069	F0U4P5	F0UEZ7	BZIP domain-containing protein.	Pre-mRNA-splicing factor Cwc24.	0.912
HCEG_01354	HCEG_04300	F0U4P5	F0UG90	BZIP domain-containing protein.	RING-1 protein.	0.920
HCEG_01354	HCEG_06376	F0U4P5	F0ULK7	BZIP domain-containing protein.	Uncharacterized protein.	0.643
HCEG_01354	HCEG_06518	F0U4P5	F0UMF9	BZIP domain-containing protein.	BRCT domain-containing protein.	0.679
HCEG_01354	HCEG_06937	F0U4P5	F0UP70	BZIP domain-containing protein.	DNA damage-binding protein 1a.	0.772
HCEG_01354	HCEG_07953	F0U4P5	F0US61	BZIP domain-containing protein.	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism.	0.656
HCEG_01354	HCEG_08325	F0U4P5	F0UT83	BZIP domain-containing protein.	DNA repair protein RAD1.	0.697
HCEG_01365	HCEG_01354	F0U4Q6	F0U4P5	Mating-type switching protein swi10.	BZIP domain-containing protein.	0.755
HCEG_01365	HCEG_01786	F0U4Q6	F0U7F7	Mating-type switching protein swi10.	DNA damage-binding protein CMR1; DNA-binding protein that binds to both single- and double- stranded DNA. Binds preferentially to UV-damaged DNA. May be involved in DNA-metabolic processes.	0.751
HCEG_01365	HCEG_02985	F0U4Q6	F0UAW3	Mating-type switching protein swi10.	Ubiquitin-like domain-containing protein.	0.755
HCEG_01365	HCEG_03676	F0U4Q6	F0UHB4	Mating-type switching protein swi10.	Nuclear pore complex subunit Nup192; Belongs to the cullin family.	0.729
HCEG_01365	HCEG_03978	F0U4Q6	F0UEN3	Mating-type switching protein swi10.	Poly [ADP-ribose] polymerase.	0.725
HCEG_01365	HCEG_04069	F0U4Q6	F0UEZ7	Mating-type switching protein swi10.	Pre-mRNA-splicing factor Cwc24.	0.813
HCEG_01365	HCEG_04300	F0U4Q6	F0UG90	Mating-type switching protein swi10.	RING-1 protein.	0.665
HCEG_01365	HCEG_06518	F0U4Q6	F0UMF9	Mating-type switching protein swi10.	BRCT domain-containing protein.	0.701