9 items (Histoplasma capsulatum H143) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	HCDG_02270	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2111 aa)
	HCDG_00014	DNA replication factor C subunit Rfc3. (345 aa)
	HCDG_02792	Uncharacterized protein. (309 aa)
	HCDG_03248	Vezatin domain-containing protein. (314 aa)
	HCDG_03249	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (548 aa)
	HCDG_05173	Activator 1 37 kDa subunit. (354 aa)
	HCDG_05757	Uncharacterized protein. (320 aa)
	HCDG_06236	DNA polymerase. (1458 aa)
	HCDG_06497	Replication factor C subunit 1. (1071 aa)

Your Current Organism:

Histoplasma capsulatum H143

NCBI taxonomy Id: 544712
Other names: Ajellomyces capsulatus H143, H. capsulatum H143

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
HCDG_00014	HCDG_02270	C6H3C0	C6H769	DNA replication factor C subunit Rfc3.	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	0.890
HCDG_00014	HCDG_02792	C6H3C0	C6H9B1	DNA replication factor C subunit Rfc3.	Uncharacterized protein.	0.833
HCDG_00014	HCDG_03248	C6H3C0	C6HAL7	DNA replication factor C subunit Rfc3.	Vezatin domain-containing protein.	0.980
HCDG_00014	HCDG_03249	C6H3C0	C6HAL8	DNA replication factor C subunit Rfc3.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.980
HCDG_00014	HCDG_05173	C6H3C0	C6HGT2	DNA replication factor C subunit Rfc3.	Activator 1 37 kDa subunit.	0.999
HCDG_00014	HCDG_05757	C6H3C0	C6HHS6	DNA replication factor C subunit Rfc3.	Uncharacterized protein.	0.810
HCDG_00014	HCDG_06236	C6H3C0	C6HI86	DNA replication factor C subunit Rfc3.	DNA polymerase.	0.810
HCDG_00014	HCDG_06497	C6H3C0	C6HJW6	DNA replication factor C subunit Rfc3.	Replication factor C subunit 1.	0.999
HCDG_02270	HCDG_00014	C6H769	C6H3C0	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	DNA replication factor C subunit Rfc3.	0.890
HCDG_02270	HCDG_02792	C6H769	C6H9B1	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	Uncharacterized protein.	0.999
HCDG_02270	HCDG_03248	C6H769	C6HAL7	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	Vezatin domain-containing protein.	0.957
HCDG_02270	HCDG_03249	C6H769	C6HAL8	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.957
HCDG_02270	HCDG_05173	C6H769	C6HGT2	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	Activator 1 37 kDa subunit.	0.923
HCDG_02270	HCDG_05757	C6H769	C6HHS6	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	Uncharacterized protein.	0.970
HCDG_02270	HCDG_06236	C6H769	C6HI86	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	DNA polymerase.	0.976
HCDG_02270	HCDG_06497	C6H769	C6HJW6	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	Replication factor C subunit 1.	0.923
HCDG_02792	HCDG_00014	C6H9B1	C6H3C0	Uncharacterized protein.	DNA replication factor C subunit Rfc3.	0.833
HCDG_02792	HCDG_02270	C6H9B1	C6H769	Uncharacterized protein.	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	0.999
HCDG_02792	HCDG_03248	C6H9B1	C6HAL7	Uncharacterized protein.	Vezatin domain-containing protein.	0.701
HCDG_02792	HCDG_03249	C6H9B1	C6HAL8	Uncharacterized protein.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.701