STRINGSTRING
HCDG_01642 HCDG_01642 HCDG_02725 HCDG_02725 HCDG_02972 HCDG_02972 HCDG_02973 HCDG_02973 HCDG_03377 HCDG_03377 HCDG_03519 HCDG_03519 HCDG_03559 HCDG_03559 HCDG_03616 HCDG_03616 PAN2 PAN2 HCDG_04654 HCDG_04654 HCDG_06236 HCDG_06236 HCDG_06778 HCDG_06778 HCDG_07098 HCDG_07098 HCDG_07529 HCDG_07529 HCDG_07283 HCDG_07283 HCDG_08044 HCDG_08044 HCDG_08698 HCDG_08698 HCDG_08437 HCDG_08437 HCDG_08528 HCDG_08528 HCDG_08569 HCDG_08569 HCDG_01777 HCDG_01777 HCDG_00823 HCDG_00823 HCDG_00447 HCDG_00447 HCDG_02315 HCDG_02315 HCDG_02270 HCDG_02270 HCDG_01928 HCDG_01928
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
HCDG_01642SAP domain-containing protein. (420 aa)
HCDG_02725Transcription elongation factor spt6. (730 aa)
HCDG_02972Pre-mRNA processing splicing factor 8. (1157 aa)
HCDG_02973Pre-mRNA processing splicing factor 8. (1490 aa)
HCDG_033773'-5' exonuclease/helicase. (947 aa)
HCDG_03519DNA polymerase. (1053 aa)
HCDG_03559CAF1 family ribonuclease. (535 aa)
HCDG_03616QDE-2-interacting protein. (751 aa)
PAN2PAN2-PAN3 deadenylation complex catalytic subunit PAN2; Catalytic subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein PAB1. PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA decaping and subsequent [...] (1190 aa)
HCDG_04654RNA binding protein. (603 aa)
HCDG_06236DNA polymerase. (1458 aa)
HCDG_06778DNA polymerase gamma. (1084 aa)
HCDG_07098CCR4-NOT transcription complex. (511 aa)
HCDG_07529DNA polymerase. (1503 aa)
HCDG_07283RNA exonuclease. (465 aa)
HCDG_080443'-5' exonuclease. (536 aa)
HCDG_08698Ribonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family. (341 aa)
HCDG_08437RNA exonuclease. (598 aa)
HCDG_08528Eukaryotic translation initiation factor 2c. (902 aa)
HCDG_08569Oligoribonuclease. (189 aa)
HCDG_01777RNA exonuclease. (638 aa)
HCDG_00823QDE2 protein. (1038 aa)
HCDG_00447Piwi domain-containing protein. (168 aa)
HCDG_02315Exosome complex exonuclease RRP6. (671 aa)
HCDG_02270DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2111 aa)
HCDG_019283'-5' exonuclease. (272 aa)
Your Current Organism:
Histoplasma capsulatum H143
NCBI taxonomy Id: 544712
Other names: Ajellomyces capsulatus H143, H. capsulatum H143
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