13 items (Histoplasma capsulatum H143) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	HCDG_01934	SET domain-containing protein. (392 aa)
	HCDG_00951	Polyubiquitin. (305 aa)
	HCDG_00838	Mitogen-activated protein kinase. (421 aa)
	HCDG_03910	Ubiquitin-conjugating enzyme E2. (154 aa)
	HCDG_01500	BZIP domain-containing protein. (252 aa)
	HCDG_06464	DUF1674 domain-containing protein. (156 aa)
	HCDG_07474	Ankyrin repeat protein. (393 aa)
	HCDG_08001	Uncharacterized protein. (54 aa)
	HCDG_07545	Anaphase-promoting complex subunit Apc5. (978 aa)
	HCDG_05243	SET domain-containing protein. (239 aa)
	HCDG_03767	Ubiquitin-conjugating enzyme E2; Belongs to the ubiquitin-conjugating enzyme family. (543 aa)
	HCDG_03585	Ubiquitin/79aa fusion protein. (152 aa)
	HCDG_02050	Ubiquitin-conjugating enzyme E2; Belongs to the ubiquitin-conjugating enzyme family. (140 aa)

Your Current Organism:

Histoplasma capsulatum H143

NCBI taxonomy Id: 544712
Other names: Ajellomyces capsulatus H143, H. capsulatum H143

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
HCDG_00838	HCDG_00951	C6H2A6	C6H2L9	Mitogen-activated protein kinase.	Polyubiquitin.	0.564
HCDG_00838	HCDG_01500	C6H2A6	C6H7T9	Mitogen-activated protein kinase.	BZIP domain-containing protein.	0.565
HCDG_00838	HCDG_02050	C6H2A6	C6H6J9	Mitogen-activated protein kinase.	Ubiquitin-conjugating enzyme E2; Belongs to the ubiquitin-conjugating enzyme family.	0.485
HCDG_00838	HCDG_03585	C6H2A6	C6HC36	Mitogen-activated protein kinase.	Ubiquitin/79aa fusion protein.	0.565
HCDG_00838	HCDG_03767	C6H2A6	C6HCL8	Mitogen-activated protein kinase.	Ubiquitin-conjugating enzyme E2; Belongs to the ubiquitin-conjugating enzyme family.	0.432
HCDG_00838	HCDG_03910	C6H2A6	C6HB28	Mitogen-activated protein kinase.	Ubiquitin-conjugating enzyme E2.	0.446
HCDG_00838	HCDG_08001	C6H2A6	C6HP70	Mitogen-activated protein kinase.	Uncharacterized protein.	0.517
HCDG_00951	HCDG_00838	C6H2L9	C6H2A6	Polyubiquitin.	Mitogen-activated protein kinase.	0.564
HCDG_00951	HCDG_01500	C6H2L9	C6H7T9	Polyubiquitin.	BZIP domain-containing protein.	0.969
HCDG_00951	HCDG_01934	C6H2L9	C6H683	Polyubiquitin.	SET domain-containing protein.	0.738
HCDG_00951	HCDG_02050	C6H2L9	C6H6J9	Polyubiquitin.	Ubiquitin-conjugating enzyme E2; Belongs to the ubiquitin-conjugating enzyme family.	0.914
HCDG_00951	HCDG_03585	C6H2L9	C6HC36	Polyubiquitin.	Ubiquitin/79aa fusion protein.	0.993
HCDG_00951	HCDG_03767	C6H2L9	C6HCL8	Polyubiquitin.	Ubiquitin-conjugating enzyme E2; Belongs to the ubiquitin-conjugating enzyme family.	0.965
HCDG_00951	HCDG_03910	C6H2L9	C6HB28	Polyubiquitin.	Ubiquitin-conjugating enzyme E2.	0.879
HCDG_00951	HCDG_05243	C6H2L9	C6HFQ3	Polyubiquitin.	SET domain-containing protein.	0.738
HCDG_00951	HCDG_07474	C6H2L9	C6HN08	Polyubiquitin.	Ankyrin repeat protein.	0.738
HCDG_00951	HCDG_07545	C6H2L9	C6HLS6	Polyubiquitin.	Anaphase-promoting complex subunit Apc5.	0.921
HCDG_00951	HCDG_08001	C6H2L9	C6HP70	Polyubiquitin.	Uncharacterized protein.	0.942
HCDG_01500	HCDG_00838	C6H7T9	C6H2A6	BZIP domain-containing protein.	Mitogen-activated protein kinase.	0.565
HCDG_01500	HCDG_00951	C6H7T9	C6H2L9	BZIP domain-containing protein.	Polyubiquitin.	0.969