40 items (Histoplasma capsulatum H143) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	HCDG_02525	ABC transporter. (929 aa)
	HCDG_01512	Multidrug resistance protein. (1161 aa)
	HCDG_01500	BZIP domain-containing protein. (252 aa)
	HCDG_01486	ATP-binding cassette protein. (751 aa)
	HCDG_02112	Iron-sulfur cluster transporter atm1. (730 aa)
	HCDG_02011	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family. (224 aa)
	HCDG_01932	AB hydrolase-1 domain-containing protein. (266 aa)
	HCDG_01924	Elongation factor 3. (1113 aa)
	HCDG_01914	Enzyme activator. (876 aa)
	HCDG_00389	AAA family ATPase. (192 aa)
	HCDG_00388	AAA family ATPase; Belongs to the AAA ATPase family. (294 aa)
	HCDG_00272	Eukaryotic translation initiation factor 2 gamma subunit. (523 aa)
	HCDG_01387	High-affinity nickel transporter. (517 aa)
	HCDG_00153	Eukaryotic translation initiation factor 2 beta subunit. (258 aa)
	HCDG_00095	Polysaccharide synthase. (304 aa)
	HCDG_01214	MDR efflux pump ABC3. (1162 aa)
	HCDG_01074	ABC a-pheromone efflux pump AtrD. (1295 aa)
	HCDG_00951	Polyubiquitin. (305 aa)
	HCDG_00772	ABC bile acid transporter. (1519 aa)
	HCDG_00540	Heavy metal tolerance protein. (1073 aa)
	HCDG_09470	Adrenoleukodystrophy protein. (723 aa)
	HCDG_09333	Multidrug resistance protein. (1220 aa)
	HCDG_09303	Vacuolar metal resistance ABC transporter. (1526 aa)
	HCDG_08463	ABC multidrug transporter. (1321 aa)
	HCDG_08806	ABC multidrug transporter. (825 aa)
	HCDG_07883	Ubiquitin-protein ligase Sel1/Ubx2. (717 aa)
	HCDG_07843	Uncharacterized protein. (52 aa)
	HCDG_07499	Eukaryotic translation initiation factor 2 alpha subunit. (309 aa)
	HCDG_07068	Protoplast regeneration and killer toxin resistance protein. (732 aa)
	HCDG_06950	Misfolded glycoproteins degradation protein Yos9. (480 aa)
	HCDG_06697	Abc transporter. (802 aa)
	HCDG_05417	Derlin; May be involved in the degradation of misfolded endoplasmic reticulum (ER) luminal proteins; Belongs to the derlin family. (257 aa)
	HCDG_04937	ATP-dependent bile acid permease. (212 aa)
	HCDG_04936	ATP-dependent bile acid permease. (981 aa)
	HCDG_03585	Ubiquitin/79aa fusion protein. (152 aa)
	HCDG_03265	Peroxisomal half ABC transporter. (862 aa)
	HCDG_02963	Heavy metal tolerance protein. (540 aa)
	HCDG_02844	ABC transporter. (622 aa)
	HCDG_02686	Chitin synthase activator. (677 aa)
	HCDG_02472	ABC multidrug transporter. (1325 aa)

Your Current Organism:

Histoplasma capsulatum H143

NCBI taxonomy Id: 544712
Other names: Ajellomyces capsulatus H143, H. capsulatum H143

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
HCDG_00095	HCDG_00772	C6H3T4	C6H240	Polysaccharide synthase.	ABC bile acid transporter.	0.527
HCDG_00095	HCDG_01074	C6H3T4	C6H2Z2	Polysaccharide synthase.	ABC a-pheromone efflux pump AtrD.	0.515
HCDG_00095	HCDG_01214	C6H3T4	C6H3G1	Polysaccharide synthase.	MDR efflux pump ABC3.	0.515
HCDG_00095	HCDG_01387	C6H3T4	C6H4E8	Polysaccharide synthase.	High-affinity nickel transporter.	0.527
HCDG_00095	HCDG_01512	C6H3T4	C6H7V1	Polysaccharide synthase.	Multidrug resistance protein.	0.515
HCDG_00095	HCDG_01932	C6H3T4	C6H681	Polysaccharide synthase.	AB hydrolase-1 domain-containing protein.	0.515
HCDG_00095	HCDG_02472	C6H3T4	C6H8E1	Polysaccharide synthase.	ABC multidrug transporter.	0.527
HCDG_00095	HCDG_04936	C6H3T4	C6HER9	Polysaccharide synthase.	ATP-dependent bile acid permease.	0.527
HCDG_00095	HCDG_04937	C6H3T4	C6HES0	Polysaccharide synthase.	ATP-dependent bile acid permease.	0.527
HCDG_00095	HCDG_07843	C6H3T4	C6HNR2	Polysaccharide synthase.	Uncharacterized protein.	0.527
HCDG_00095	HCDG_08463	C6H3T4	C6HR78	Polysaccharide synthase.	ABC multidrug transporter.	0.515
HCDG_00095	HCDG_08806	C6H3T4	C6HQY4	Polysaccharide synthase.	ABC multidrug transporter.	0.518
HCDG_00095	HCDG_09303	C6H3T4	C6HSX2	Polysaccharide synthase.	Vacuolar metal resistance ABC transporter.	0.527
HCDG_00095	HCDG_09333	C6H3T4	C6HT02	Polysaccharide synthase.	Multidrug resistance protein.	0.515
HCDG_00153	HCDG_00272	C6H472	C6H4V1	Eukaryotic translation initiation factor 2 beta subunit.	Eukaryotic translation initiation factor 2 gamma subunit.	0.999
HCDG_00153	HCDG_00951	C6H472	C6H2L9	Eukaryotic translation initiation factor 2 beta subunit.	Polyubiquitin.	0.837
HCDG_00153	HCDG_01486	C6H472	C6H7S5	Eukaryotic translation initiation factor 2 beta subunit.	ATP-binding cassette protein.	0.642
HCDG_00153	HCDG_01500	C6H472	C6H7T9	Eukaryotic translation initiation factor 2 beta subunit.	BZIP domain-containing protein.	0.968
HCDG_00153	HCDG_01924	C6H472	C6H673	Eukaryotic translation initiation factor 2 beta subunit.	Elongation factor 3.	0.982
HCDG_00153	HCDG_03585	C6H472	C6HC36	Eukaryotic translation initiation factor 2 beta subunit.	Ubiquitin/79aa fusion protein.	0.968