43 items (Histoplasma capsulatum H143) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	HCDG_06228	DNA repair and recombination protein RAD26. (819 aa)
	HCDG_00951	Polyubiquitin. (305 aa)
	HCDG_00973	COP9 signalosome complex subunit 7a. (339 aa)
	HCDG_01079	CDK-activating kinase assembly factor MAT1. (369 aa)
	HCDG_01426	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (129 aa)
	HCDG_02028	Uncharacterized protein. (1036 aa)
	HCDG_01500	BZIP domain-containing protein. (252 aa)
	HCDG_02455	WD40 domain-containing protein. (487 aa)
	HCDG_02665	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (485 aa)
	HCDG_02882	DNA excision repair protein. (979 aa)
	HCDG_03215	DNA-directed RNA polymerase I. (159 aa)
	HCDG_04003	RNA polymerase subunit. (236 aa)
	HCDG_03422	DNA-directed RNA polymerase II. (168 aa)
	HCDG_03448	COP9 signalosome complex subunit CsnE. (352 aa)
	HCDG_03585	Ubiquitin/79aa fusion protein. (152 aa)
	HCDG_03734	DNA repair helicase RAD3. (773 aa)
	HCDG_04348	RNA polymerase II subunit 3. (333 aa)
	HCDG_04763	DNA repair helicase RAD25. (1379 aa)
	HCDG_04924	Uncharacterized protein. (181 aa)
	HCDG_09339	COP9 subunit 3. (482 aa)
	HCDG_09227	COP9 signalosome complex subunit 6. (396 aa)
	HCDG_08495	Polymerase II polypeptide D. (152 aa)
	HCDG_08138	RNA polymerase II transcription factor B subunit 5. (104 aa)
	HCDG_08020	DNA-directed RNA polymerase. (115 aa)
	HCDG_07876	Ribosomal polymerase B1. (132 aa)
	HCDG_07875	DNA-directed RNA polymerase II. (668 aa)
	HCDG_07443	DNA damage-binding protein 1a. (1134 aa)
	HCDG_07195	DNA-directed RNA polymerase I. (114 aa)
	HCDG_07128	RNA polymerase II transcription factor B subunit 4. (412 aa)
	HCDG_05405	RING finger domain-containing protein. (125 aa)
	HCDG_07626	COP9 signalosome complex subunit 2. (395 aa)
	HCDG_07118	CYCLIN domain-containing protein; Belongs to the cyclin family. (489 aa)
	HCDG_07058	COP9 signalosome subunit CsnD. (424 aa)
	HCDG_07035	RNA polymerase II subunit 7. (169 aa)
	HCDG_05104	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family. (505 aa)
	HCDG_07034	Uncharacterized protein. (668 aa)
	HCDG_07006	COP9 signalosome complex subunit 1. (495 aa)
	HCDG_06943	COP9 signalosome subunit 8. (221 aa)
	HCDG_06774	Nuclear pore complex subunit Nup192; Belongs to the cullin family. (2454 aa)
	HCDG_06428	Peptidyl prolyl cis-trans isomerase Cyclophilin. (87 aa)
	HCDG_06073	Metallothionein-I gene transcription activator. (75 aa)
	HCDG_06048	RNA polymerase II transcription factor. (644 aa)
	HCDG_06229	DNA repair and recombination protein RAD26. (102 aa)

Your Current Organism:

Histoplasma capsulatum H143

NCBI taxonomy Id: 544712
Other names: Ajellomyces capsulatus H143, H. capsulatum H143

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
HCDG_00951	HCDG_00973	C6H2L9	C6H2P1	Polyubiquitin.	COP9 signalosome complex subunit 7a.	0.780
HCDG_00951	HCDG_01079	C6H2L9	C6H2Z7	Polyubiquitin.	CDK-activating kinase assembly factor MAT1.	0.698
HCDG_00951	HCDG_01426	C6H2L9	C6H4I7	Polyubiquitin.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.675
HCDG_00951	HCDG_01500	C6H2L9	C6H7T9	Polyubiquitin.	BZIP domain-containing protein.	0.969
HCDG_00951	HCDG_02455	C6H2L9	C6H8C4	Polyubiquitin.	WD40 domain-containing protein.	0.661
HCDG_00951	HCDG_02665	C6H2L9	C6H8Y4	Polyubiquitin.	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	0.683
HCDG_00951	HCDG_02882	C6H2L9	C6H9K1	Polyubiquitin.	DNA excision repair protein.	0.820
HCDG_00951	HCDG_03215	C6H2L9	C6HAI4	Polyubiquitin.	DNA-directed RNA polymerase I.	0.667
HCDG_00951	HCDG_03422	C6H2L9	C6HBM3	Polyubiquitin.	DNA-directed RNA polymerase II.	0.688
HCDG_00951	HCDG_03448	C6H2L9	C6HBP9	Polyubiquitin.	COP9 signalosome complex subunit CsnE.	0.863
HCDG_00951	HCDG_03585	C6H2L9	C6HC36	Polyubiquitin.	Ubiquitin/79aa fusion protein.	0.993
HCDG_00951	HCDG_03734	C6H2L9	C6HCI5	Polyubiquitin.	DNA repair helicase RAD3.	0.703
HCDG_00951	HCDG_04003	C6H2L9	C6HBC1	Polyubiquitin.	RNA polymerase subunit.	0.685
HCDG_00951	HCDG_04348	C6H2L9	C6HDR7	Polyubiquitin.	RNA polymerase II subunit 3.	0.691
HCDG_00951	HCDG_04763	C6H2L9	C6HE96	Polyubiquitin.	DNA repair helicase RAD25.	0.729
HCDG_00951	HCDG_04924	C6H2L9	C6HEQ7	Polyubiquitin.	Uncharacterized protein.	0.650
HCDG_00951	HCDG_05104	C6H2L9	C6HGL3	Polyubiquitin.	General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.	0.671
HCDG_00951	HCDG_05405	C6H2L9	C6HG65	Polyubiquitin.	RING finger domain-containing protein.	0.957
HCDG_00951	HCDG_06048	C6H2L9	C6HJ14	Polyubiquitin.	RNA polymerase II transcription factor.	0.714
HCDG_00951	HCDG_06073	C6H2L9	C6HJ39	Polyubiquitin.	Metallothionein-I gene transcription activator.	0.687