7 items (Histoplasma capsulatum H143) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	HCDG_06715	Ubiquitin C-terminal hydrolase; Belongs to the peptidase C19 family. (734 aa)
	HCDG_02713	ZZ type zinc finger domain-containing protein. (168 aa)
	HCDG_02712	ZZ type zinc finger domain-containing protein. (449 aa)
	HCDG_00951	Polyubiquitin. (305 aa)
	HCDG_01500	BZIP domain-containing protein. (252 aa)
	HCDG_03585	Ubiquitin/79aa fusion protein. (152 aa)
	HCDG_06775	Serine/threonine-protein kinase Tel1; Serine/threonine protein kinase which activates checkpoint signaling upon genotoxic stresses such as ionizing radiation (IR), ultraviolet light (UV), or DNA replication stalling, thereby acting as a DNA damage sensor. Recognizes the substrate consensus sequence [ST]- Q. Phosphorylates histone H2A to form H2AS128ph (gamma-H2A) at sites of DNA damage, involved in the regulation of DNA damage response mechanism. Required for the control of telomere length and genome stability; Belongs to the PI3/PI4-kinase family. ATM subfamily. (2777 aa)

Your Current Organism:

Histoplasma capsulatum H143

NCBI taxonomy Id: 544712
Other names: Ajellomyces capsulatus H143, H. capsulatum H143

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
HCDG_00951	HCDG_01500	C6H2L9	C6H7T9	Polyubiquitin.	BZIP domain-containing protein.	0.969
HCDG_00951	HCDG_02712	C6H2L9	C6H931	Polyubiquitin.	ZZ type zinc finger domain-containing protein.	0.997
HCDG_00951	HCDG_02713	C6H2L9	C6H932	Polyubiquitin.	ZZ type zinc finger domain-containing protein.	0.841
HCDG_00951	HCDG_03585	C6H2L9	C6HC36	Polyubiquitin.	Ubiquitin/79aa fusion protein.	0.993
HCDG_00951	HCDG_06715	C6H2L9	C6HKI4	Polyubiquitin.	Ubiquitin C-terminal hydrolase; Belongs to the peptidase C19 family.	0.972
HCDG_00951	HCDG_06775	C6H2L9	C6HKP4	Polyubiquitin.	Serine/threonine-protein kinase Tel1; Serine/threonine protein kinase which activates checkpoint signaling upon genotoxic stresses such as ionizing radiation (IR), ultraviolet light (UV), or DNA replication stalling, thereby acting as a DNA damage sensor. Recognizes the substrate consensus sequence [ST]- Q. Phosphorylates histone H2A to form H2AS128ph (gamma-H2A) at sites of DNA damage, involved in the regulation of DNA damage response mechanism. Required for the control of telomere length and genome stability; Belongs to the PI3/PI4-kinase family. ATM subfamily.	0.673
HCDG_01500	HCDG_00951	C6H7T9	C6H2L9	BZIP domain-containing protein.	Polyubiquitin.	0.969
HCDG_01500	HCDG_02712	C6H7T9	C6H931	BZIP domain-containing protein.	ZZ type zinc finger domain-containing protein.	0.998
HCDG_01500	HCDG_02713	C6H7T9	C6H932	BZIP domain-containing protein.	ZZ type zinc finger domain-containing protein.	0.854
HCDG_01500	HCDG_06715	C6H7T9	C6HKI4	BZIP domain-containing protein.	Ubiquitin C-terminal hydrolase; Belongs to the peptidase C19 family.	0.966
HCDG_01500	HCDG_06775	C6H7T9	C6HKP4	BZIP domain-containing protein.	Serine/threonine-protein kinase Tel1; Serine/threonine protein kinase which activates checkpoint signaling upon genotoxic stresses such as ionizing radiation (IR), ultraviolet light (UV), or DNA replication stalling, thereby acting as a DNA damage sensor. Recognizes the substrate consensus sequence [ST]- Q. Phosphorylates histone H2A to form H2AS128ph (gamma-H2A) at sites of DNA damage, involved in the regulation of DNA damage response mechanism. Required for the control of telomere length and genome stability; Belongs to the PI3/PI4-kinase family. ATM subfamily.	0.638
HCDG_02712	HCDG_00951	C6H931	C6H2L9	ZZ type zinc finger domain-containing protein.	Polyubiquitin.	0.997
HCDG_02712	HCDG_01500	C6H931	C6H7T9	ZZ type zinc finger domain-containing protein.	BZIP domain-containing protein.	0.998
HCDG_02712	HCDG_02713	C6H931	C6H932	ZZ type zinc finger domain-containing protein.	ZZ type zinc finger domain-containing protein.	0.982
HCDG_02712	HCDG_03585	C6H931	C6HC36	ZZ type zinc finger domain-containing protein.	Ubiquitin/79aa fusion protein.	0.998
HCDG_02712	HCDG_06775	C6H931	C6HKP4	ZZ type zinc finger domain-containing protein.	Serine/threonine-protein kinase Tel1; Serine/threonine protein kinase which activates checkpoint signaling upon genotoxic stresses such as ionizing radiation (IR), ultraviolet light (UV), or DNA replication stalling, thereby acting as a DNA damage sensor. Recognizes the substrate consensus sequence [ST]- Q. Phosphorylates histone H2A to form H2AS128ph (gamma-H2A) at sites of DNA damage, involved in the regulation of DNA damage response mechanism. Required for the control of telomere length and genome stability; Belongs to the PI3/PI4-kinase family. ATM subfamily.	0.971
HCDG_02713	HCDG_00951	C6H932	C6H2L9	ZZ type zinc finger domain-containing protein.	Polyubiquitin.	0.841
HCDG_02713	HCDG_01500	C6H932	C6H7T9	ZZ type zinc finger domain-containing protein.	BZIP domain-containing protein.	0.854
HCDG_02713	HCDG_02712	C6H932	C6H931	ZZ type zinc finger domain-containing protein.	ZZ type zinc finger domain-containing protein.	0.982
HCDG_02713	HCDG_03585	C6H932	C6HC36	ZZ type zinc finger domain-containing protein.	Ubiquitin/79aa fusion protein.	0.854