24 items (Histoplasma capsulatum H143) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	HCDG_04242	Uncharacterized protein. (106 aa)
	HCDG_07955	Cell division control protein. (170 aa)
	HCDG_03391	UBX domain-containing protein. (499 aa)
	HCDG_03131	Endoplasmic reticulum and nuclear membrane protein. (658 aa)
	HCDG_01500	BZIP domain-containing protein. (252 aa)
	HCDG_01497	Dipeptidyl peptidase 3; Belongs to the peptidase M49 family. (706 aa)
	HCDG_02016	Uncharacterized protein. (159 aa)
	HCDG_00389	AAA family ATPase. (192 aa)
	HCDG_00388	AAA family ATPase; Belongs to the AAA ATPase family. (294 aa)
	HCDG_00363	Ubiquitin fusion degradation protein. (716 aa)
	HCDG_00951	Polyubiquitin. (305 aa)
	HCDG_00834	Uncharacterized protein. (180 aa)
	HCDG_00747	ATPase_AAA_core domain-containing protein. (228 aa)
	HCDG_07956	Cell division cycle protein; Belongs to the AAA ATPase family. (461 aa)
	HCDG_08954	NLPC_P60 domain-containing protein. (276 aa)
	HCDG_06766	Uncharacterized protein. (118 aa)
	HCDG_06648	AAA family ATPase. (982 aa)
	HCDG_05580	Uncharacterized protein. (336 aa)
	HCDG_05020	Ubiquitin fusion degradation protein Ufd1. (322 aa)
	HCDG_05457	ATPase_AAA_core domain-containing protein. (125 aa)
	HCDG_05405	RING finger domain-containing protein. (125 aa)
	HCDG_04408	AAA family ATPase. (998 aa)
	HCDG_03585	Ubiquitin/79aa fusion protein. (152 aa)
	HCDG_07846	ATPase_AAA_core domain-containing protein. (523 aa)

Your Current Organism:

Histoplasma capsulatum H143

NCBI taxonomy Id: 544712
Other names: Ajellomyces capsulatus H143, H. capsulatum H143

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
HCDG_00363	HCDG_00388	C6H542	C6H567	Ubiquitin fusion degradation protein.	AAA family ATPase; Belongs to the AAA ATPase family.	0.768
HCDG_00363	HCDG_00389	C6H542	C6H568	Ubiquitin fusion degradation protein.	AAA family ATPase.	0.768
HCDG_00363	HCDG_00747	C6H542	C6H215	Ubiquitin fusion degradation protein.	ATPase_AAA_core domain-containing protein.	0.768
HCDG_00363	HCDG_00834	C6H542	C6H2A2	Ubiquitin fusion degradation protein.	Uncharacterized protein.	0.768
HCDG_00363	HCDG_00951	C6H542	C6H2L9	Ubiquitin fusion degradation protein.	Polyubiquitin.	0.906
HCDG_00363	HCDG_01500	C6H542	C6H7T9	Ubiquitin fusion degradation protein.	BZIP domain-containing protein.	0.836
HCDG_00363	HCDG_02016	C6H542	C6H6G5	Ubiquitin fusion degradation protein.	Uncharacterized protein.	0.646
HCDG_00363	HCDG_03131	C6H542	C6HAA0	Ubiquitin fusion degradation protein.	Endoplasmic reticulum and nuclear membrane protein.	0.980
HCDG_00363	HCDG_03391	C6H542	C6HBJ2	Ubiquitin fusion degradation protein.	UBX domain-containing protein.	0.977
HCDG_00363	HCDG_03585	C6H542	C6HC36	Ubiquitin fusion degradation protein.	Ubiquitin/79aa fusion protein.	0.836
HCDG_00363	HCDG_04242	C6H542	C6HDG1	Ubiquitin fusion degradation protein.	Uncharacterized protein.	0.731
HCDG_00363	HCDG_04408	C6H542	C6HDX7	Ubiquitin fusion degradation protein.	AAA family ATPase.	0.768
HCDG_00363	HCDG_05405	C6H542	C6HG65	Ubiquitin fusion degradation protein.	RING finger domain-containing protein.	0.736
HCDG_00363	HCDG_05457	C6H542	C6HGB7	Ubiquitin fusion degradation protein.	ATPase_AAA_core domain-containing protein.	0.768
HCDG_00363	HCDG_06648	C6H542	C6HKB7	Ubiquitin fusion degradation protein.	AAA family ATPase.	0.768
HCDG_00363	HCDG_06766	C6H542	C6HKN5	Ubiquitin fusion degradation protein.	Uncharacterized protein.	0.768
HCDG_00363	HCDG_07846	C6H542	C6HNR5	Ubiquitin fusion degradation protein.	ATPase_AAA_core domain-containing protein.	0.768
HCDG_00363	HCDG_07955	C6H542	C6HP24	Ubiquitin fusion degradation protein.	Cell division control protein.	0.768
HCDG_00363	HCDG_07956	C6H542	C6HP25	Ubiquitin fusion degradation protein.	Cell division cycle protein; Belongs to the AAA ATPase family.	0.768
HCDG_00363	HCDG_08954	C6H542	C6HRX3	Ubiquitin fusion degradation protein.	NLPC_P60 domain-containing protein.	0.731