Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| BMQ_0053 | rsmI | BMQ_0053 | BMQ_0055 | Methyltransferase. | Conserved hypothetical protein; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA. | 0.923 |
| BMQ_0053 | trmB | BMQ_0053 | BMQ_4834 | Methyltransferase. | tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. | 0.534 |
| BMQ_0127 | rsmB | BMQ_0127 | BMQ_4238 | 16S rRNA m(2)G 1207 methyltransferase. | Ribosomal RNA small subunit methyltransferase B; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | 0.486 |
| BMQ_0127 | trmD | BMQ_0127 | BMQ_4210 | 16S rRNA m(2)G 1207 methyltransferase. | tRNA (guanine-N1)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family. | 0.488 |
| BMQ_0127 | trmFO | BMQ_0127 | BMQ_4201 | 16S rRNA m(2)G 1207 methyltransferase. | tRNA:m(5)U-54 methyltransferase; Catalyzes the folate-dependent formation of 5-methyl-uridine at position 54 (M-5-U54) in all tRNAs; Belongs to the MnmG family. TrmFO subfamily. | 0.441 |
| BMQ_0442 | BMQ_4300 | BMQ_0442 | BMQ_4300 | RNA methyltransferase, TrmH family, group 2; Could methylate the ribose at the nucleotide 34 wobble position in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily. | Putative methyltransferase. | 0.405 |
| BMQ_0442 | rlmH | BMQ_0442 | BMQ_5250 | RNA methyltransferase, TrmH family, group 2; Could methylate the ribose at the nucleotide 34 wobble position in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily. | Conserved hypothetical protein; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA; Belongs to the RNA methyltransferase RlmH family. | 0.509 |
| BMQ_0442 | rsmB | BMQ_0442 | BMQ_4238 | RNA methyltransferase, TrmH family, group 2; Could methylate the ribose at the nucleotide 34 wobble position in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily. | Ribosomal RNA small subunit methyltransferase B; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | 0.457 |
| BMQ_0442 | rsmE | BMQ_0442 | BMQ_4562 | RNA methyltransferase, TrmH family, group 2; Could methylate the ribose at the nucleotide 34 wobble position in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily. | Ribosomal RNA small subunit methyltransferase E; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | 0.422 |
| BMQ_0442 | trmB | BMQ_0442 | BMQ_4834 | RNA methyltransferase, TrmH family, group 2; Could methylate the ribose at the nucleotide 34 wobble position in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily. | tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. | 0.501 |
| BMQ_0857 | BMQ_3138 | BMQ_0857 | BMQ_3138 | Methyltransferase domain protein. | Phosphatidylethanolamine N-methyltransferase. | 0.476 |
| BMQ_1440 | BMQ_4606 | BMQ_1440 | BMQ_4606 | Putative RNA methylase protein family (UPF0020); Belongs to the methyltransferase superfamily. | O-methyltransferase. | 0.467 |
| BMQ_1440 | BMQ_5243 | BMQ_1440 | BMQ_5243 | Putative RNA methylase protein family (UPF0020); Belongs to the methyltransferase superfamily. | Protein of unknown function (UPF0064). | 0.934 |
| BMQ_1440 | rsmB | BMQ_1440 | BMQ_4238 | Putative RNA methylase protein family (UPF0020); Belongs to the methyltransferase superfamily. | Ribosomal RNA small subunit methyltransferase B; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | 0.452 |
| BMQ_1440 | trmFO | BMQ_1440 | BMQ_4201 | Putative RNA methylase protein family (UPF0020); Belongs to the methyltransferase superfamily. | tRNA:m(5)U-54 methyltransferase; Catalyzes the folate-dependent formation of 5-methyl-uridine at position 54 (M-5-U54) in all tRNAs; Belongs to the MnmG family. TrmFO subfamily. | 0.589 |
| BMQ_1546 | cheR | BMQ_1546 | BMQ_4326 | Chemotaxis protein methyltransferase CheR. | Chemotaxis protein methyltransferase. | 0.922 |
| BMQ_1733 | BMQ_1789 | BMQ_1733 | BMQ_1789 | Methyltransferase domain protein. | Putative methyltransferase. | 0.400 |
| BMQ_1789 | BMQ_1733 | BMQ_1789 | BMQ_1733 | Putative methyltransferase. | Methyltransferase domain protein. | 0.400 |
| BMQ_1828 | BMQ_3138 | BMQ_1828 | BMQ_3138 | Methyltransferase. | Phosphatidylethanolamine N-methyltransferase. | 0.477 |
| BMQ_3041 | BMQ_3659 | BMQ_3041 | BMQ_3659 | Methyltransferase. | Putative methyltransferase. | 0.427 |
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