Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AEF84663.1 | AEF85428.1 | TREPR_0609 | TREPR_0604 | Hypothetical protein; Identified by glimmer; putative. | Identified by match to protein family HMM PF03372. | 0.437 |
| AEF84663.1 | AEF86034.1 | TREPR_0609 | TREPR_0605 | Hypothetical protein; Identified by glimmer; putative. | Putative virulence protein. | 0.686 |
| AEF84663.1 | AEF86180.1 | TREPR_0609 | TREPR_0607 | Hypothetical protein; Identified by glimmer; putative. | RNA methyltransferase, TrmH family; Identified by match to protein family HMM PF00588; match to protein family HMM PF08032; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | 0.773 |
| AEF84663.1 | AEF86647.1 | TREPR_0609 | TREPR_0606 | Hypothetical protein; Identified by glimmer; putative. | Putative virulence-associated protein; Identified by match to protein family HMM PF01850. | 0.686 |
| AEF84697.1 | AEF85428.1 | TREPR_0603 | TREPR_0604 | Putative phospholipid-binding domain family protein; Identified by match to protein family HMM PF04972. | Identified by match to protein family HMM PF03372. | 0.538 |
| AEF85428.1 | AEF84663.1 | TREPR_0604 | TREPR_0609 | Identified by match to protein family HMM PF03372. | Hypothetical protein; Identified by glimmer; putative. | 0.437 |
| AEF85428.1 | AEF84697.1 | TREPR_0604 | TREPR_0603 | Identified by match to protein family HMM PF03372. | Putative phospholipid-binding domain family protein; Identified by match to protein family HMM PF04972. | 0.538 |
| AEF85428.1 | AEF86034.1 | TREPR_0604 | TREPR_0605 | Identified by match to protein family HMM PF03372. | Putative virulence protein. | 0.486 |
| AEF85428.1 | AEF86180.1 | TREPR_0604 | TREPR_0607 | Identified by match to protein family HMM PF03372. | RNA methyltransferase, TrmH family; Identified by match to protein family HMM PF00588; match to protein family HMM PF08032; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | 0.437 |
| AEF85428.1 | AEF86647.1 | TREPR_0604 | TREPR_0606 | Identified by match to protein family HMM PF03372. | Putative virulence-associated protein; Identified by match to protein family HMM PF01850. | 0.485 |
| AEF86034.1 | AEF84663.1 | TREPR_0605 | TREPR_0609 | Putative virulence protein. | Hypothetical protein; Identified by glimmer; putative. | 0.686 |
| AEF86034.1 | AEF85428.1 | TREPR_0605 | TREPR_0604 | Putative virulence protein. | Identified by match to protein family HMM PF03372. | 0.486 |
| AEF86034.1 | AEF86180.1 | TREPR_0605 | TREPR_0607 | Putative virulence protein. | RNA methyltransferase, TrmH family; Identified by match to protein family HMM PF00588; match to protein family HMM PF08032; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | 0.686 |
| AEF86034.1 | AEF86647.1 | TREPR_0605 | TREPR_0606 | Putative virulence protein. | Putative virulence-associated protein; Identified by match to protein family HMM PF01850. | 0.966 |
| AEF86180.1 | AEF84663.1 | TREPR_0607 | TREPR_0609 | RNA methyltransferase, TrmH family; Identified by match to protein family HMM PF00588; match to protein family HMM PF08032; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | Hypothetical protein; Identified by glimmer; putative. | 0.773 |
| AEF86180.1 | AEF85428.1 | TREPR_0607 | TREPR_0604 | RNA methyltransferase, TrmH family; Identified by match to protein family HMM PF00588; match to protein family HMM PF08032; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | Identified by match to protein family HMM PF03372. | 0.437 |
| AEF86180.1 | AEF86034.1 | TREPR_0607 | TREPR_0605 | RNA methyltransferase, TrmH family; Identified by match to protein family HMM PF00588; match to protein family HMM PF08032; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | Putative virulence protein. | 0.686 |
| AEF86180.1 | AEF86647.1 | TREPR_0607 | TREPR_0606 | RNA methyltransferase, TrmH family; Identified by match to protein family HMM PF00588; match to protein family HMM PF08032; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | Putative virulence-associated protein; Identified by match to protein family HMM PF01850. | 0.686 |
| AEF86647.1 | AEF84663.1 | TREPR_0606 | TREPR_0609 | Putative virulence-associated protein; Identified by match to protein family HMM PF01850. | Hypothetical protein; Identified by glimmer; putative. | 0.686 |
| AEF86647.1 | AEF85428.1 | TREPR_0606 | TREPR_0604 | Putative virulence-associated protein; Identified by match to protein family HMM PF01850. | Identified by match to protein family HMM PF03372. | 0.485 |
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