STRINGSTRING
cbiD cbiD cbiT cbiT cobM cobM AEB99886.1 AEB99886.1 cobJ cobJ cobK cobK
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
cbiDCobalamin biosynthesis protein CbiD; Catalyzes the methylation of C-1 in cobalt-precorrin-5B to form cobalt-precorrin-6A. (367 aa)
cbiTprecorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; COGs: COG2242 Precorrin-6B methylase 2; InterPro IPR003682:IPR014008; KEGG: has:Halsa_2200 precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; PFAM: rRNA small subunit methyltransferase G; SPTR: Precorrin-6y c5,15-methyltransferase; TIGRFAM: Cobalamin (vitamin B12) biosynthesis CbiT, precorrin-6Y methyltransferase-core; IMG reference gene:2504586393; PFAM: rRNA small subunit methyltransferase G; TIGRFAM: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. (195 aa)
cobMCOGs: COG2875 Precorrin-4 methylase; InterPro IPR006362:IPR000878; KEGG: vpr:Vpar_1143 precorrin-4 C11-methyltransferase; PFAM: Tetrapyrrole methylase; PRIAM: Precorrin-4 C(11)-methyltransferase; SPTR: Precorrin-4 C(11)-methyltransferase; TIGRFAM: Cobalamin (vitamin B12) biosynthesis CobM/CbiF, precorrin-4 C11-methyltransferase, core; IMG reference gene:2504586394; PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases; TIGRFAM: precorrin-4 C11-methyltransferase. (252 aa)
AEB99886.1COGs: COG2073 Cobalamin biosynthesis protein CbiG; InterPro IPR021744:IPR002750; KEGG: aar:Acear_0836 cobalamin (vitamin B12) biosynthesis CbiG protein; PFAM: Cobalamin synthesis G N-terminal; Cobalamin (vitamin B12) biosynthesis CbiG, core; SPTR: CbiG protein; IMG reference gene:2504586395; PFAM: Cobalamin synthesis G C-terminus; Cobalamin synthesis G N-terminal. (350 aa)
cobJCOGs: COG1010 Precorrin-3B methylase; InterPro IPR006363:IPR000878; KEGG: vpr:Vpar_1141 precorrin-3B C17-methyltransferase; PFAM: Tetrapyrrole methylase; PRIAM: Precorrin-3B C(17)-methyltransferase; SPTR: Precorrin-3B C(17)-methyltransferase; TIGRFAM: Cobalamin (vitamin B12) biosynthesis CobJ/CibH, precorrin-3B C17-methyltransferase, core; IMG reference gene:2504586396; PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases; TIGRFAM: precorrin-3B C17-methyltransferase. (246 aa)
cobKCOGs: COG2099 Precorrin-6x reductase; InterPro IPR003723; KEGG: vpr:Vpar_1140 precorrin-6x reductase; PFAM: Cobalamin (vitamin B12) biosynthesis CobK/CbiJ, precorrin-6x reductase; SPTR: Precorrin-6x reductase; TIGRFAM: Cobalamin (vitamin B12) biosynthesis CobK/CbiJ, precorrin-6x reductase; IMG reference gene:2504586397; PFAM: Precorrin-6x reductase CbiJ/CobK; TIGRFAM: precorrin-6x reductase. (254 aa)
Your Current Organism:
Selenomonas sputigena
NCBI taxonomy Id: 546271
Other names: S. sputigena ATCC 35185, Selenomonas sputigena ATCC 35185, Selenomonas sputigena DSM 20758, Selenomonas sputigena HMP_JCVI_SC0180, Selenomonas sputigena str. ATCC 35185, Selenomonas sputigena strain ATCC 35185
Server load: medium (48%) [HD]