STRINGSTRING
hfq hfq miaA miaA AEC00233.1 AEC00233.1 AEC00345.1 AEC00345.1 spoVS spoVS AEC00347.1 AEC00347.1 rnc rnc
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Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
hfqProtein hfq; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. (77 aa)
miaAtRNA delta(2)-isopentenylpyrophosphate transferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. (319 aa)
AEC00233.1Beta-lactamase domain protein; COGs: COG2220 Zn-dependent hydrolase of the beta-lactamase fold; InterPro IPR001279; KEGG: afn:Acfer_1231 beta-lactamase domain protein; PFAM: Beta-lactamase-like; SMART: Beta-lactamase-like; SPTR: UPF0173 metal-dependent hydrolase SELSPUOL_00953; IMG reference gene:2504586754; PFAM: Metallo-beta-lactamase superfamily; Belongs to the UPF0173 family. (225 aa)
AEC00345.1PHP domain protein; COGs: COG0613 metal-dependent phosphoesterase (PHP family); InterPro IPR004013:IPR003141; KEGG: slp:Slip_1055 PHP domain protein; PFAM: PHP, C-terminal; SMART: Polymerase/histidinol phosphatase, N-terminal; SPTR: S-adenosylmethionine:tRNA ribosyltransferase-isomerase; IMG reference gene:2504586867; PFAM: PHP domain. (276 aa)
spoVSCOGs: COG2359 conserved hypothetical protein; InterPro IPR007347; KEGG: tmt:Tmath_1216 stage V sporulation protein S; PFAM: Stage V sporulation protein S; SPTR: Stage V sporulation protein S; IMG reference gene:2504586868; PFAM: Stage V sporulation protein S (SpoVS). (86 aa)
AEC00347.1COGs: COG1692 conserved hypothetical protein; InterPro IPR004843:IPR005235; KEGG: tjr:TherJR_1281 metallophosphoesterase; PFAM: Metallo-dependent phosphatase; SPTR: Ser/Thr protein phosphatase family protein; TIGRFAM: Conserved hypothetical protein CHP00282; IMG reference gene:2504586869; TIGRFAM: metallophosphoesterase, MG_246/BB_0505 family. (258 aa)
rncRibonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. (242 aa)
Your Current Organism:
Selenomonas sputigena
NCBI taxonomy Id: 546271
Other names: S. sputigena ATCC 35185, Selenomonas sputigena ATCC 35185, Selenomonas sputigena DSM 20758, Selenomonas sputigena HMP_JCVI_SC0180, Selenomonas sputigena str. ATCC 35185, Selenomonas sputigena strain ATCC 35185
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