STRINGSTRING
RSA4_1 RSA4_1 REI1_0 REI1_0 BUD20_0 BUD20_0 RRS1_0 RRS1_0 IPI3_0 IPI3_0 ARX1_0 ARX1_0 RIX1_1 RIX1_1 RIX1_0 RIX1_0 LSG1 LSG1 IPI1-1_0 IPI1-1_0 MDN1 MDN1 NMD3_0 NMD3_0 YVH1_0 YVH1_0 ARX1_1 ARX1_1 IPI3_1 IPI3_1 BUD20_1 BUD20_1 NMD3_1 NMD3_1 REH1_1 REH1_1 TIF6_1 TIF6_1 SDA1_1 SDA1_1 IPI1-1_1 IPI1-1_1 CGR1_3 CGR1_3 cdb4 cdb4 ALB1 ALB1 TIF6_0 TIF6_0 RSA4_0 RSA4_0 REH1_0 REH1_0 NOP53_0 NOP53_0 RPF2_0 RPF2_0
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
RSA4_1Ribosome assembly protein 4. (513 aa)
REI1_0Cytoplasmic 60S subunit biogenesis factor REI1. (391 aa)
BUD20_0Bud site selection protein 20. (168 aa)
RRS1_0Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family. (205 aa)
IPI3_0Pre-rRNA-processing protein IPI3. (502 aa)
ARX1_0Putative metalloprotease ARX1. (568 aa)
RIX1_1Pre-rRNA-processing protein RIX1. (173 aa)
RIX1_0Pre-rRNA-processing protein RIX1. (326 aa)
LSG1Large subunit GTPase 1; Belongs to the small GTPase superfamily. SAR1 family. (843 aa)
IPI1-1_0Pre-rRNA-processing protein IPI1-1. (359 aa)
MDN1Midasin; Nuclear chaperone required for maturation and nuclear export of pre-60S ribosome subunits; Belongs to the midasin family. (4929 aa)
NMD3_060S ribosomal export protein NMD3; Acts as an adapter for the XPO1/CRM1-mediated export of the 60S ribosomal subunit; Belongs to the NMD3 family. (516 aa)
YVH1_0Tyrosine-protein phosphatase YVH1. (319 aa)
ARX1_1Putative metalloprotease ARX1. (568 aa)
IPI3_1Pre-rRNA-processing protein IPI3. (496 aa)
BUD20_1Bud site selection protein 20. (168 aa)
NMD3_160S ribosomal export protein NMD3; Acts as an adapter for the XPO1/CRM1-mediated export of the 60S ribosomal subunit; Belongs to the NMD3 family. (516 aa)
REH1_1Cytoplasmic 60S subunit biogenesis factor REH1. (439 aa)
TIF6_1Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export; Belongs to the eIF-6 family. (245 aa)
SDA1_1Protein SDA1; Required for 60S pre-ribosomal subunits export to the cytoplasm; Belongs to the SDA1 family. (743 aa)
IPI1-1_1Pre-rRNA-processing protein IPI1-1. (360 aa)
CGR1_3rRNA-processing protein; Involved in nucleolar integrity and required for processing of the pre-rRNA for the 60S ribosome subunit. Belongs to the CGR1 family. (135 aa)
cdb4Curved DNA-binding protein. (375 aa)
ALB1Ribosome biogenesis protein ALB1. (158 aa)
TIF6_0Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export; Belongs to the eIF-6 family. (245 aa)
RSA4_0Ribosome assembly protein 4. (513 aa)
REH1_0Cytoplasmic 60S subunit biogenesis factor REH1. (440 aa)
NOP53_0Ribosome biogenesis protein NOP53; May play a role in ribosome biogenesis. Belongs to the NOP53 family. (412 aa)
RPF2_0Ribosome biogenesis protein RPF2. (332 aa)
Your Current Organism:
Candida viswanathii
NCBI taxonomy Id: 5486
Other names: ATCC 22981, C. viswanathii, CBS 4024, CCRC 21330, CCRC:21330, Candida lodderae, Candida viswanathii Viswanathan & H.S. Randhawa ex R.S. Sandhu & H.S. Randhawa, 2015, DBVPG 6189, IFO 10321, JCM 9567, NRRL Y-6660
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