STRINGSTRING
Cantr_07303 Cantr_07303 Ube2w_0 Ube2w_0 IRC20_0 IRC20_0 PRP40_0 PRP40_0 RAD5_0 RAD5_0 RAD5_1 RAD5_1 CDC34 CDC34 RTF1 RTF1 yip1 yip1 Cantr_00008 Cantr_00008 PRP40_1 PRP40_1 HTB2_3 HTB2_3 UBC5_1 UBC5_1 ULS1 ULS1 Cantr_06485 Cantr_06485 UBC1 UBC1 HTB2_2 HTB2_2 UBC5_0 UBC5_0 ubi3 ubi3 RAD5_3 RAD5_3 IRC20_1 IRC20_1 Ube2w_1 Ube2w_1 RAD5_2 RAD5_2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Cantr_07303Helicase C-terminal domain-containing protein. (196 aa)
Ube2w_0Ubiquitin-conjugating enzyme E2 W. (224 aa)
IRC20_0Putative ATP-dependent helicase IRC20. (1687 aa)
PRP40_0Pre-mRNA-processing protein PRP40. (623 aa)
RAD5_0DNA repair protein RAD5. (1139 aa)
RAD5_1DNA repair protein RAD5. (1089 aa)
CDC34Ubiquitin-conjugating enzyme E2. (210 aa)
RTF1RNA polymerase-associated protein RTF1. (521 aa)
yip1Protein YIP. (257 aa)
Cantr_00008Uncharacterized protein. (399 aa)
PRP40_1Pre-mRNA-processing protein PRP40. (624 aa)
HTB2_3Histone H2B; Belongs to the histone H2B family. (130 aa)
UBC5_1Ubiquitin-conjugating enzyme E2 5; Belongs to the ubiquitin-conjugating enzyme family. (190 aa)
ULS1ATP-dependent helicase ULS1. (1170 aa)
Cantr_06485Uncharacterized protein. (414 aa)
UBC1Ubiquitin-conjugating enzyme E2 1; Belongs to the ubiquitin-conjugating enzyme family. (220 aa)
HTB2_2Histone H2B; Belongs to the histone H2B family. (130 aa)
UBC5_0Ubiquitin-conjugating enzyme E2 5; Belongs to the ubiquitin-conjugating enzyme family. (190 aa)
ubi3Ubiquitin-40S ribosomal protein S27a. (151 aa)
RAD5_3DNA repair protein RAD5. (1138 aa)
IRC20_1Putative ATP-dependent helicase IRC20. (1676 aa)
Ube2w_1Ubiquitin-conjugating enzyme E2 W. (222 aa)
RAD5_2DNA repair protein RAD5. (1087 aa)
Your Current Organism:
Candida viswanathii
NCBI taxonomy Id: 5486
Other names: ATCC 22981, C. viswanathii, CBS 4024, CCRC 21330, CCRC:21330, Candida lodderae, Candida viswanathii Viswanathan & H.S. Randhawa ex R.S. Sandhu & H.S. Randhawa, 2015, DBVPG 6189, IFO 10321, JCM 9567, NRRL Y-6660
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