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baeR baeR ybjJ_1 ybjJ_1 rcsD_2 rcsD_2 rcsB rcsB cpxA_3 cpxA_3 narX narX narL_2 narL_2 narL_1 narL_1 envZ envZ ompR ompR AOE39410.1 AOE39410.1 kdpD kdpD AOE39412.1 AOE39412.1 kdpB kdpB AOE39414.1 AOE39414.1 kdpF kdpF AOE39417.1 AOE39417.1 gudP_2 gudP_2 cpxR cpxR cpxA_2 cpxA_2 trmL trmL basR_1 basR_1 qseC_1 qseC_1 qseC_2 qseC_2 basR_3 basR_3 uhpT_2 uhpT_2 uhpC_2 uhpC_2 AOE40105.1 AOE40105.1 uhpA_1 uhpA_1 arcA_2 arcA_2 phoB_2 phoB_2 phoR phoR kdpE kdpE bvgA bvgA AOE40617.1 AOE40617.1 sdiA sdiA uvrY uvrY phoQ_3 phoQ_3 phoP phoP AOE41044.1 AOE41044.1 AOE41045.1 AOE41045.1 AOE41046.1 AOE41046.1 AOE41418.1 AOE41418.1 rstA rstA rstB rstB AOE41421.1 AOE41421.1 basR_2 basR_2 basS_1 basS_1 AOE41738.1 AOE41738.1 rcsA rcsA ompR_3 ompR_3
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
baeRTwo-component system sensor histidine kinase BaeA; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology. (235 aa)
ybjJ_1MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (384 aa)
rcsD_2Phosphotransferase RcsD; Derived by automated computational analysis using gene prediction method: Protein Homology. (885 aa)
rcsBDNA-binding response regulator; Component of the Rcs signaling system, which controls transcription of numerous genes. RcsB is the response regulator that binds to regulatory DNA regions. (216 aa)
cpxA_3Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (446 aa)
narXTwo-component system sensor histidine kinase NarQ; Derived by automated computational analysis using gene prediction method: Protein Homology. (562 aa)
narL_2Nitrate/nitrite response regulator NarP; NarP is phosphorylated by NarX and NarQ and can activate fdnG and nitrite or nitrate reductase systems; represses expression of other anaerobic genes; Derived by automated computational analysis using gene prediction method: Protein Homology. (209 aa)
narL_1Two-component system response regulator NarL; Derived by automated computational analysis using gene prediction method: Protein Homology. (200 aa)
envZTwo-component system sensor histidine kinase EnvZ; Derived by automated computational analysis using gene prediction method: Protein Homology. (455 aa)
ompRTwo-component system response regulator OmpR; Derived by automated computational analysis using gene prediction method: Protein Homology. (239 aa)
AOE39410.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (167 aa)
kdpDTwo-component system sensor histidine kinase KdbD; Derived by automated computational analysis using gene prediction method: Protein Homology. (891 aa)
AOE39412.1Potassium-transporting ATPase subunit C; Derived by automated computational analysis using gene prediction method: Protein Homology. (188 aa)
kdpBPotassium-transporting ATPase subunit B; Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system. Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IA subfamily. (682 aa)
AOE39414.1Potassium-transporting ATPase subunit KdpA; Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane. Belongs to the KdpA family. (562 aa)
kdpFPotassium-transporting ATPase subunit F; Derived by automated computational analysis using gene prediction method: Protein Homology. (29 aa)
AOE39417.1Hydroxyacid dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (318 aa)
gudP_2Glucarate transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (463 aa)
cpxRResponse regulator in two-component regulatory system with CpxA; part of the envelope stress response system; Derived by automated computational analysis using gene prediction method: Protein Homology. (232 aa)
cpxA_2Two-component system sensor histidine kinase CpxA; Derived by automated computational analysis using gene prediction method: Protein Homology. (459 aa)
trmLtRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL; Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S-adenosyl-L-methionine to the 2'-OH of the wobble nucleotide. (157 aa)
basR_1Response regulator in two-component regulatory system with QseC; regulates FlhCD which is the master regulator for flagella and motility genes; Derived by automated computational analysis using gene prediction method: Protein Homology. (223 aa)
qseC_1Two-component system sensor histidine kinase QseC; Derived by automated computational analysis using gene prediction method: Protein Homology. (448 aa)
qseC_2Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (451 aa)
basR_3DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (219 aa)
uhpT_2Hexose phosphate transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (463 aa)
uhpC_2Regulatory protein UhpC; Derived by automated computational analysis using gene prediction method: Protein Homology. (442 aa)
AOE40105.1Two-component system sensor histidine kinase UhpB; Derived by automated computational analysis using gene prediction method: Protein Homology. (499 aa)
uhpA_1Response regulator in two-component regulatory system wtih UhpB; phosphorylated UhpA is a positive activator uhpT, a hexose phosphates transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (197 aa)
arcA_2Two-component system response regulator ArcA; Derived by automated computational analysis using gene prediction method: Protein Homology. (238 aa)
phoB_2Phosphate regulon transcriptional regulatory protein PhoB; Derived by automated computational analysis using gene prediction method: Protein Homology. (229 aa)
phoRMembrane-associated histidine protein kinase that phosphorylates phoB in response to environmental signals as part of the two-component phosphate regulatory system phoR/phoB; Derived by automated computational analysis using gene prediction method: Protein Homology. (437 aa)
kdpETwo-component system response regulator KdpE; Derived by automated computational analysis using gene prediction method: Protein Homology. (224 aa)
bvgASensor histidine kinase BvgS; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology. (193 aa)
AOE40617.1Homeobox protein YbgS; Derived by automated computational analysis using gene prediction method: Protein Homology. (122 aa)
sdiATranscriptional regulator SdiA; Derived by automated computational analysis using gene prediction method: Protein Homology. (240 aa)
uvrYTwo-component system response regulator UvrY; Derived by automated computational analysis using gene prediction method: Protein Homology. (219 aa)
phoQ_350S ribosomal protein L16 arginine hydroxylase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology. (486 aa)
phoPResponse regulator in two-component regulatory system with PhoQ; involved in magnesium starvation and stress; Derived by automated computational analysis using gene prediction method: Protein Homology. (222 aa)
AOE41044.1RNA polymerase subunit sigma; Derived by automated computational analysis using gene prediction method: Protein Homology. (181 aa)
AOE41045.1Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (491 aa)
AOE41046.1DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (213 aa)
AOE41418.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (137 aa)
rstATwo-component system response regulator RstA; Derived by automated computational analysis using gene prediction method: Protein Homology. (241 aa)
rstBTwo-component system sensor histidine kinase RstB; Derived by automated computational analysis using gene prediction method: Protein Homology. (433 aa)
AOE41421.1Peptidase M32; Derived by automated computational analysis using gene prediction method: Protein Homology. (495 aa)
basR_2Two-component system response regulator BasR; Derived by automated computational analysis using gene prediction method: Protein Homology. (226 aa)
basS_1Two-component system sensor histidine kinase BasS; Derived by automated computational analysis using gene prediction method: Protein Homology. (352 aa)
AOE41738.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (80 aa)
rcsAHelix-turn-helix transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (211 aa)
ompR_3Guanine permease; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology. (247 aa)
Your Current Organism:
Pantoea agglomerans
NCBI taxonomy Id: 549
Other names: ATCC 27155, Bacillus milletiae, Bacterium herbicola, CCUG 539, CFBP 3845, CIP 57.51, DSM 3493, Enterobacter agglomerans, Erwinia herbicola, Erwinia milletiae, ICMP 12534, ICPB 3435, NBRC 102470, NCTC 9381, P. agglomerans, Pantoea herbicola, Pantoea sp. SL1_M5, Pseudomonas herbicola, bacterium G33-1
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