STRINGSTRING
baeR baeR cpxA_3 cpxA_3 basR_1 basR_1 qseC_1 qseC_1 qseC_2 qseC_2 basR_3 basR_3
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
baeRTwo-component system sensor histidine kinase BaeA; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology. (235 aa)
cpxA_3Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (446 aa)
basR_1Response regulator in two-component regulatory system with QseC; regulates FlhCD which is the master regulator for flagella and motility genes; Derived by automated computational analysis using gene prediction method: Protein Homology. (223 aa)
qseC_1Two-component system sensor histidine kinase QseC; Derived by automated computational analysis using gene prediction method: Protein Homology. (448 aa)
qseC_2Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (451 aa)
basR_3DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (219 aa)
Your Current Organism:
Pantoea agglomerans
NCBI taxonomy Id: 549
Other names: ATCC 27155, Bacillus milletiae, Bacterium herbicola, CCUG 539, CFBP 3845, CIP 57.51, DSM 3493, Enterobacter agglomerans, Erwinia herbicola, Erwinia milletiae, ICMP 12534, ICPB 3435, NBRC 102470, NCTC 9381, P. agglomerans, Pantoea herbicola, Pantoea sp. SL1_M5, Pseudomonas herbicola, bacterium G33-1
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.