(12 nodes) Helix_turn_helix, Lux Regulon, and Histidine kinase network (Pantoea agglomerans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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Predicted Interactions

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protein homology

Your Input:
	narX	Two-component system sensor histidine kinase NarQ; Derived by automated computational analysis using gene prediction method: Protein Homology. (562 aa)
	narL_2	Nitrate/nitrite response regulator NarP; NarP is phosphorylated by NarX and NarQ and can activate fdnG and nitrite or nitrate reductase systems; represses expression of other anaerobic genes; Derived by automated computational analysis using gene prediction method: Protein Homology. (209 aa)
	narL_1	Two-component system response regulator NarL; Derived by automated computational analysis using gene prediction method: Protein Homology. (200 aa)
	uhpT_2	Hexose phosphate transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (463 aa)
	uhpC_2	Regulatory protein UhpC; Derived by automated computational analysis using gene prediction method: Protein Homology. (442 aa)
	AOE40105.1	Two-component system sensor histidine kinase UhpB; Derived by automated computational analysis using gene prediction method: Protein Homology. (499 aa)
	uhpA_1	Response regulator in two-component regulatory system wtih UhpB; phosphorylated UhpA is a positive activator uhpT, a hexose phosphates transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (197 aa)
	sdiA	Transcriptional regulator SdiA; Derived by automated computational analysis using gene prediction method: Protein Homology. (240 aa)
	uvrY	Two-component system response regulator UvrY; Derived by automated computational analysis using gene prediction method: Protein Homology. (219 aa)
	AOE41044.1	RNA polymerase subunit sigma; Derived by automated computational analysis using gene prediction method: Protein Homology. (181 aa)
	AOE41045.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (491 aa)
	AOE41046.1	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (213 aa)

Your Current Organism:

Pantoea agglomerans

NCBI taxonomy Id: 549
Other names: ATCC 27155, Bacillus milletiae, Bacterium herbicola, CCUG 539, CFBP 3845, CIP 57.51, DSM 3493, Enterobacter agglomerans, Erwinia herbicola, Erwinia milletiae, ICMP 12534, ICPB 3435, NBRC 102470, NCTC 9381, P. agglomerans, Pantoea herbicola, Pantoea sp. SL1_M5, Pseudomonas herbicola, bacterium G33-1

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AOE40105.1	AOE41046.1	BEE12_09755	BEE12_15000	Two-component system sensor histidine kinase UhpB; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.765
AOE40105.1	narL_1	BEE12_09755	BEE12_02745	Two-component system sensor histidine kinase UhpB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Two-component system response regulator NarL; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.742
AOE40105.1	narL_2	BEE12_09755	BEE12_01775	Two-component system sensor histidine kinase UhpB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nitrate/nitrite response regulator NarP; NarP is phosphorylated by NarX and NarQ and can activate fdnG and nitrite or nitrate reductase systems; represses expression of other anaerobic genes; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.783
AOE40105.1	uhpA_1	BEE12_09755	BEE12_09760	Two-component system sensor histidine kinase UhpB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Response regulator in two-component regulatory system wtih UhpB; phosphorylated UhpA is a positive activator uhpT, a hexose phosphates transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.996
AOE40105.1	uhpC_2	BEE12_09755	BEE12_09750	Two-component system sensor histidine kinase UhpB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Regulatory protein UhpC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.989
AOE40105.1	uhpT_2	BEE12_09755	BEE12_09745	Two-component system sensor histidine kinase UhpB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hexose phosphate transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.735
AOE40105.1	uvrY	BEE12_09755	BEE12_13835	Two-component system sensor histidine kinase UhpB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Two-component system response regulator UvrY; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.733
AOE41044.1	AOE41045.1	BEE12_14990	BEE12_14995	RNA polymerase subunit sigma; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.714
AOE41044.1	AOE41046.1	BEE12_14990	BEE12_15000	RNA polymerase subunit sigma; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.509
AOE41045.1	AOE41044.1	BEE12_14995	BEE12_14990	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase subunit sigma; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.714
AOE41045.1	AOE41046.1	BEE12_14995	BEE12_15000	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.979
AOE41045.1	narL_1	BEE12_14995	BEE12_02745	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Two-component system response regulator NarL; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.904
AOE41045.1	narL_2	BEE12_14995	BEE12_01775	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nitrate/nitrite response regulator NarP; NarP is phosphorylated by NarX and NarQ and can activate fdnG and nitrite or nitrate reductase systems; represses expression of other anaerobic genes; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.904
AOE41045.1	uhpA_1	BEE12_14995	BEE12_09760	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Response regulator in two-component regulatory system wtih UhpB; phosphorylated UhpA is a positive activator uhpT, a hexose phosphates transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.905
AOE41045.1	uvrY	BEE12_14995	BEE12_13835	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Two-component system response regulator UvrY; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.903
AOE41046.1	AOE40105.1	BEE12_15000	BEE12_09755	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Two-component system sensor histidine kinase UhpB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.765
AOE41046.1	AOE41044.1	BEE12_15000	BEE12_14990	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase subunit sigma; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.509
AOE41046.1	AOE41045.1	BEE12_15000	BEE12_14995	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.979
AOE41046.1	narX	BEE12_15000	BEE12_01770	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Two-component system sensor histidine kinase NarQ; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.821
narL_1	AOE40105.1	BEE12_02745	BEE12_09755	Two-component system response regulator NarL; Derived by automated computational analysis using gene prediction method: Protein Homology.	Two-component system sensor histidine kinase UhpB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.742

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