(23 nodes) HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain network (Pantoea agglomerans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	tsr_2	Methyl-accepting chemotaxis protein II; Serine sensor receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (520 aa)
	AOE41794.1	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (874 aa)
	trg_5	Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (568 aa)
	basS_1	Two-component system sensor histidine kinase BasS; Derived by automated computational analysis using gene prediction method: Protein Homology. (352 aa)
	tsr_1	Methyl-accepting chemotaxis protein II; Serine sensor receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (557 aa)
	tsr_4	Methyl-accepting chemotaxis protein II; Serine sensor receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (558 aa)
	trg_6	Methyl-accepting chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (514 aa)
	rstB	Two-component system sensor histidine kinase RstB; Derived by automated computational analysis using gene prediction method: Protein Homology. (433 aa)
	tar_5	Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (554 aa)
	tar_6	Methyl-accepting chemotaxis protein II; Serine sensor receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (552 aa)
	phoQ_3	50S ribosomal protein L16 arginine hydroxylase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology. (486 aa)
	tar_7	Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (631 aa)
	tar_11	Methyl-accepting chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (546 aa)
	tar_8	Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (525 aa)
	yhjK_2	Biofilm formation regulator HmsP; HmsP in Yersinia pestis plays a role in invasion of epithelial cells; the EAL-domain portion of HmsP from Y. pestis shows phosphodiesterase activity which is required for the inhibition of biofilm formation; inner membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (657 aa)
	cpxA_2	Two-component system sensor histidine kinase CpxA; Derived by automated computational analysis using gene prediction method: Protein Homology. (459 aa)
	envZ	Two-component system sensor histidine kinase EnvZ; Derived by automated computational analysis using gene prediction method: Protein Homology. (455 aa)
	trg_1	Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (643 aa)
	tar_1	Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (519 aa)
	barA_1	Two-component sensor histidine kinase BarA; Derived by automated computational analysis using gene prediction method: Protein Homology. (909 aa)
	narX	Two-component system sensor histidine kinase NarQ; Derived by automated computational analysis using gene prediction method: Protein Homology. (562 aa)
	cpxA_3	Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (446 aa)
	trg_2	Methyl-accepting chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (640 aa)

Your Current Organism:

Pantoea agglomerans

NCBI taxonomy Id: 549
Other names: ATCC 27155, Bacillus milletiae, Bacterium herbicola, CCUG 539, CFBP 3845, CIP 57.51, DSM 3493, Enterobacter agglomerans, Erwinia herbicola, Erwinia milletiae, ICMP 12534, ICPB 3435, NBRC 102470, NCTC 9381, P. agglomerans, Pantoea herbicola, Pantoea sp. SL1_M5, Pseudomonas herbicola, bacterium G33-1

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
barA_1	yhjK_2	BEE12_02880	BEE12_07360	Two-component sensor histidine kinase BarA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Biofilm formation regulator HmsP; HmsP in Yersinia pestis plays a role in invasion of epithelial cells; the EAL-domain portion of HmsP from Y. pestis shows phosphodiesterase activity which is required for the inhibition of biofilm formation; inner membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.577
trg_1	trg_2	BEE12_04400	BEE12_00160	Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Methyl-accepting chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.925
trg_2	trg_1	BEE12_00160	BEE12_04400	Methyl-accepting chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.925
trg_5	trg_6	BEE12_18850	BEE12_17320	Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Methyl-accepting chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.910
trg_6	trg_5	BEE12_17320	BEE12_18850	Methyl-accepting chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.910
tsr_1	tsr_2	BEE12_18525	BEE12_18520	Methyl-accepting chemotaxis protein II; Serine sensor receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Methyl-accepting chemotaxis protein II; Serine sensor receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.460
tsr_2	tsr_1	BEE12_18520	BEE12_18525	Methyl-accepting chemotaxis protein II; Serine sensor receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Methyl-accepting chemotaxis protein II; Serine sensor receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.460
tsr_2	tsr_4	BEE12_18520	BEE12_18515	Methyl-accepting chemotaxis protein II; Serine sensor receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Methyl-accepting chemotaxis protein II; Serine sensor receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.533
tsr_4	tsr_2	BEE12_18515	BEE12_18520	Methyl-accepting chemotaxis protein II; Serine sensor receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Methyl-accepting chemotaxis protein II; Serine sensor receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.533
yhjK_2	barA_1	BEE12_07360	BEE12_02880	Biofilm formation regulator HmsP; HmsP in Yersinia pestis plays a role in invasion of epithelial cells; the EAL-domain portion of HmsP from Y. pestis shows phosphodiesterase activity which is required for the inhibition of biofilm formation; inner membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Two-component sensor histidine kinase BarA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.577

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