STRINGSTRING
ntrC_1 ntrC_1 basR_1 basR_1 uhpA_1 uhpA_1 arcA_2 arcA_2 cheV cheV phoB_2 phoB_2 kdpE kdpE bvgA bvgA uvrY uvrY phoP phoP AOE41046.1 AOE41046.1 rstA rstA cheY cheY cheB cheB basR_2 basR_2 ompR_3 ompR_3 AOE41794.1 AOE41794.1 cpxR cpxR ompR ompR barA_1 barA_1 narL_1 narL_1 qseF qseF narL_2 narL_2 mrkE mrkE BEE12_01270 BEE12_01270 rcsC_2 rcsC_2 rcsB rcsB baeR baeR basR_3 basR_3 arcB arcB
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ntrC_1Nitrogen regulation protein NR(I); Derived by automated computational analysis using gene prediction method: Protein Homology. (469 aa)
basR_1Response regulator in two-component regulatory system with QseC; regulates FlhCD which is the master regulator for flagella and motility genes; Derived by automated computational analysis using gene prediction method: Protein Homology. (223 aa)
uhpA_1Response regulator in two-component regulatory system wtih UhpB; phosphorylated UhpA is a positive activator uhpT, a hexose phosphates transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (197 aa)
arcA_2Two-component system response regulator ArcA; Derived by automated computational analysis using gene prediction method: Protein Homology. (238 aa)
cheVChemotaxis protein CheV; Derived by automated computational analysis using gene prediction method: Protein Homology. (320 aa)
phoB_2Phosphate regulon transcriptional regulatory protein PhoB; Derived by automated computational analysis using gene prediction method: Protein Homology. (229 aa)
kdpETwo-component system response regulator KdpE; Derived by automated computational analysis using gene prediction method: Protein Homology. (224 aa)
bvgASensor histidine kinase BvgS; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology. (193 aa)
uvrYTwo-component system response regulator UvrY; Derived by automated computational analysis using gene prediction method: Protein Homology. (219 aa)
phoPResponse regulator in two-component regulatory system with PhoQ; involved in magnesium starvation and stress; Derived by automated computational analysis using gene prediction method: Protein Homology. (222 aa)
AOE41046.1DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (213 aa)
rstATwo-component system response regulator RstA; Derived by automated computational analysis using gene prediction method: Protein Homology. (241 aa)
cheYTwo-component system response regulator; Chemotaxis regulator that, when phosphorylated, interacts with the flagellar motor causing the flagella to spin clockwise which causes the cell to tumble; Derived by automated computational analysis using gene prediction method: Protein Homology. (129 aa)
cheBChemotaxis response regulator protein-glutamate methylesterase; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. (349 aa)
basR_2Two-component system response regulator BasR; Derived by automated computational analysis using gene prediction method: Protein Homology. (226 aa)
ompR_3Guanine permease; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology. (247 aa)
AOE41794.1Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (874 aa)
cpxRResponse regulator in two-component regulatory system with CpxA; part of the envelope stress response system; Derived by automated computational analysis using gene prediction method: Protein Homology. (232 aa)
ompRTwo-component system response regulator OmpR; Derived by automated computational analysis using gene prediction method: Protein Homology. (239 aa)
barA_1Two-component sensor histidine kinase BarA; Derived by automated computational analysis using gene prediction method: Protein Homology. (909 aa)
narL_1Two-component system response regulator NarL; Derived by automated computational analysis using gene prediction method: Protein Homology. (200 aa)
qseFTwo-component system response regulator GlrR; Derived by automated computational analysis using gene prediction method: Protein Homology. (444 aa)
narL_2Nitrate/nitrite response regulator NarP; NarP is phosphorylated by NarX and NarQ and can activate fdnG and nitrite or nitrate reductase systems; represses expression of other anaerobic genes; Derived by automated computational analysis using gene prediction method: Protein Homology. (209 aa)
mrkEDNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (242 aa)
BEE12_01270Histidine kinase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology. (223 aa)
rcsC_2Two-component system sensor histidine kinase/response regulator; Component of the Rcs signaling system, which controls transcription of numerous genes. RcsC functions as a membrane- associated protein kinase that phosphorylates RcsD in response to environmental signals. The phosphoryl group is then transferred to the response regulator RcsB. (950 aa)
rcsBDNA-binding response regulator; Component of the Rcs signaling system, which controls transcription of numerous genes. RcsB is the response regulator that binds to regulatory DNA regions. (216 aa)
baeRTwo-component system sensor histidine kinase BaeA; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology. (235 aa)
basR_3DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (219 aa)
arcBAerobic respiration two-component sensor histidine kinase ArcB; Derived by automated computational analysis using gene prediction method: Protein Homology. (777 aa)
Your Current Organism:
Pantoea agglomerans
NCBI taxonomy Id: 549
Other names: ATCC 27155, Bacillus milletiae, Bacterium herbicola, CCUG 539, CFBP 3845, CIP 57.51, DSM 3493, Enterobacter agglomerans, Erwinia herbicola, Erwinia milletiae, ICMP 12534, ICPB 3435, NBRC 102470, NCTC 9381, P. agglomerans, Pantoea herbicola, Pantoea sp. SL1_M5, Pseudomonas herbicola, bacterium G33-1
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