(40 nodes) Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily network (Niastella populi)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	OQP68434.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1364 aa)
	OQP68563.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (563 aa)
	OQP58327.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (787 aa)
	OQP58452.1	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (497 aa)
	OQP56539.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (1125 aa)
	OQP56630.1	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (1374 aa)
	OQP56632.1	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (415 aa)
	OQP56633.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1194 aa)
	OQP56635.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (1031 aa)
	OQP53578.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (1468 aa)
	OQP53679.1	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (1377 aa)
	OQP46660.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (502 aa)
	OQP46810.1	PAS domain-containing sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (423 aa)
	OQP45618.1	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (789 aa)
	OQP45818.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (419 aa)
	OQP67576.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1394 aa)
	OQP65658.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (878 aa)
	OQP62264.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1334 aa)
	OQP61580.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (1351 aa)
	OQP60765.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (521 aa)
	OQP58805.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (116 aa)
	OQP58820.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1124 aa)
	OQP57549.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (711 aa)
	OQP57333.1	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (1353 aa)
	OQP57375.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (1413 aa)
	OQP56769.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (1366 aa)
	OQP56780.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1363 aa)
	OQP56702.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (920 aa)
	OQP56694.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (391 aa)
	OQP56197.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (1016 aa)
	OQP55776.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (867 aa)
	A4R26_28215	Hypothetical protein; Incomplete; too short partial abutting assembly gap; missing stop; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (1869 aa)
	OQP52716.1	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (431 aa)
	OQP49930.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (384 aa)
	OQP48001.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (792 aa)
	OQP48002.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (596 aa)
	OQP47819.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (1026 aa)
	OQP47825.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (1236 aa)
	OQP47828.1	Serine/threonine protein phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology. (222 aa)
	OQP44913.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (1360 aa)

Your Current Organism:

Niastella populi

NCBI taxonomy Id: 550983
Other names: CCTCC AB 208238, KCTC 22560, N. populi, Niastella populi Zhang et al. 2010, Niastella sp. THYL-44, strain THYL-44

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A4R26_28215	OQP44913.1	A4R26_28215	A4R26_32475	Hypothetical protein; Incomplete; too short partial abutting assembly gap; missing stop; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.999
A4R26_28215	OQP45618.1	A4R26_28215	A4R26_08925	Hypothetical protein; Incomplete; too short partial abutting assembly gap; missing stop; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
A4R26_28215	OQP45818.1	A4R26_28215	A4R26_10060	Hypothetical protein; Incomplete; too short partial abutting assembly gap; missing stop; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.999
A4R26_28215	OQP46660.1	A4R26_28215	A4R26_08025	Hypothetical protein; Incomplete; too short partial abutting assembly gap; missing stop; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
A4R26_28215	OQP46810.1	A4R26_28215	A4R26_08370	Hypothetical protein; Incomplete; too short partial abutting assembly gap; missing stop; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	PAS domain-containing sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
A4R26_28215	OQP47819.1	A4R26_28215	A4R26_31785	Hypothetical protein; Incomplete; too short partial abutting assembly gap; missing stop; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.999
A4R26_28215	OQP47825.1	A4R26_28215	A4R26_31820	Hypothetical protein; Incomplete; too short partial abutting assembly gap; missing stop; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.999
A4R26_28215	OQP47828.1	A4R26_28215	A4R26_31835	Hypothetical protein; Incomplete; too short partial abutting assembly gap; missing stop; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Serine/threonine protein phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
A4R26_28215	OQP48001.1	A4R26_28215	A4R26_31435	Hypothetical protein; Incomplete; too short partial abutting assembly gap; missing stop; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.999
A4R26_28215	OQP48002.1	A4R26_28215	A4R26_31440	Hypothetical protein; Incomplete; too short partial abutting assembly gap; missing stop; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.999
A4R26_28215	OQP49930.1	A4R26_28215	A4R26_30230	Hypothetical protein; Incomplete; too short partial abutting assembly gap; missing stop; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.999
A4R26_28215	OQP52716.1	A4R26_28215	A4R26_28220	Hypothetical protein; Incomplete; too short partial abutting assembly gap; missing stop; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
A4R26_28215	OQP53578.1	A4R26_28215	A4R26_06265	Hypothetical protein; Incomplete; too short partial abutting assembly gap; missing stop; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.999
A4R26_28215	OQP53679.1	A4R26_28215	A4R26_06845	Hypothetical protein; Incomplete; too short partial abutting assembly gap; missing stop; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
A4R26_28215	OQP55776.1	A4R26_28215	A4R26_27130	Hypothetical protein; Incomplete; too short partial abutting assembly gap; missing stop; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.999
A4R26_28215	OQP56197.1	A4R26_28215	A4R26_26535	Hypothetical protein; Incomplete; too short partial abutting assembly gap; missing stop; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.999
A4R26_28215	OQP56539.1	A4R26_28215	A4R26_05090	Hypothetical protein; Incomplete; too short partial abutting assembly gap; missing stop; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.999
A4R26_28215	OQP56630.1	A4R26_28215	A4R26_05590	Hypothetical protein; Incomplete; too short partial abutting assembly gap; missing stop; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
A4R26_28215	OQP56632.1	A4R26_28215	A4R26_05605	Hypothetical protein; Incomplete; too short partial abutting assembly gap; missing stop; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
A4R26_28215	OQP56633.1	A4R26_28215	A4R26_05610	Hypothetical protein; Incomplete; too short partial abutting assembly gap; missing stop; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999