(13 nodes) Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily network (Niastella populi)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	OQP68563.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (563 aa)
	OQP58452.1	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (497 aa)
	OQP56630.1	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (1374 aa)
	OQP56633.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1194 aa)
	OQP56635.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (1031 aa)
	OQP53578.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (1468 aa)
	OQP45618.1	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (789 aa)
	OQP65658.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (878 aa)
	OQP61580.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (1351 aa)
	OQP57549.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (711 aa)
	OQP56702.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (920 aa)
	OQP48002.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (596 aa)
	OQP47819.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (1026 aa)

Your Current Organism:

Niastella populi

NCBI taxonomy Id: 550983
Other names: CCTCC AB 208238, KCTC 22560, N. populi, Niastella populi Zhang et al. 2010, Niastella sp. THYL-44, strain THYL-44

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OQP45618.1	OQP47819.1	A4R26_08925	A4R26_31785	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.999
OQP45618.1	OQP48002.1	A4R26_08925	A4R26_31440	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.999
OQP45618.1	OQP53578.1	A4R26_08925	A4R26_06265	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.998
OQP45618.1	OQP56630.1	A4R26_08925	A4R26_05590	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
OQP45618.1	OQP56633.1	A4R26_08925	A4R26_05610	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
OQP45618.1	OQP56635.1	A4R26_08925	A4R26_05620	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.999
OQP45618.1	OQP56702.1	A4R26_08925	A4R26_25465	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
OQP45618.1	OQP57549.1	A4R26_08925	A4R26_23780	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.999
OQP45618.1	OQP58452.1	A4R26_08925	A4R26_03065	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
OQP45618.1	OQP61580.1	A4R26_08925	A4R26_18605	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.999
OQP45618.1	OQP65658.1	A4R26_08925	A4R26_14625	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.999
OQP45618.1	OQP68563.1	A4R26_08925	A4R26_01815	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.999
OQP47819.1	OQP45618.1	A4R26_31785	A4R26_08925	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
OQP47819.1	OQP48002.1	A4R26_31785	A4R26_31440	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.999
OQP47819.1	OQP53578.1	A4R26_31785	A4R26_06265	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.999
OQP47819.1	OQP56630.1	A4R26_31785	A4R26_05590	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hybrid sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
OQP47819.1	OQP56633.1	A4R26_31785	A4R26_05610	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
OQP47819.1	OQP56635.1	A4R26_31785	A4R26_05620	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.999
OQP47819.1	OQP56702.1	A4R26_31785	A4R26_25465	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
OQP47819.1	OQP57549.1	A4R26_31785	A4R26_23780	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.999