(32 nodes) Nitrogen metabolism network (Flavobacterium glycines)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	gltD	Glutamate synthase (NADH) small subunit. (484 aa)
	glnA	Glutamine synthetase. (729 aa)
	glnII	Glutamine synthetase. (339 aa)
	SDK02460.1	Carbonic anhydrase. (208 aa)
	SDJ95810.1	Ferredoxin-nitrate reductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily. (1174 aa)
	SDJ95771.1	Nitrate/nitrite transport system substrate-binding protein. (410 aa)
	SDJ95732.1	Nitrate/nitrite transport system permease protein. (295 aa)
	cmpD	Bacitracin ABC transporter ATP-binding protein; Bicarbonate transport system ATP-binding protein/nitrate/nitrite transport system ATP-binding protein. (268 aa)
	SDJ61737.1	Type IX secretion system membrane protein, PorP/SprF family. (334 aa)
	SDJ35356.1	Sulfate permease, SulP family. (510 aa)
	SDJ30182.1	Iron complex outermembrane recepter protein. (695 aa)
	SDJ11338.1	Nitrite reductase (NADH) large subunit. (835 aa)
	nirD-2	Nitrite reductase (NADH) small subunit. (125 aa)
	SDJ11162.1	MFS transporter, NNP family, nitrate/nitrite transporter. (494 aa)
	SDJ09647.1	Nitrate/nitrite transport system substrate-binding protein. (459 aa)
	gltA	Glutamate synthase (NADH) large subunit. (1504 aa)
	cynT	Carbonic anhydrase. (211 aa)
	sulP	Sulfate permease, MFS superfamily. (546 aa)
	SDJ05549.1	MFS transporter, NNP family, nitrate/nitrite transporter. (462 aa)
	nasC	Assimilatory nitrate reductase catalytic subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (738 aa)
	SDJ00793.1	Hypothetical protein. (349 aa)
	SDJ00760.1	MFS transporter, NNP family, nitrate/nitrite transporter. (553 aa)
	SDJ00725.1	MFS transporter, NNP family, nitrate/nitrite transporter. (491 aa)
	cycA	Nitrite reductase (NO-forming). (124 aa)
	SDJ00563.1	Dissimilatory nitrite reductase (NO-forming), copper type apoprotein. (495 aa)
	norB	Nitric oxide reductase, NorB subunit apoprotein; Belongs to the heme-copper respiratory oxidase family. (444 aa)
	SDJ00302.1	Nitric oxide reductase, NorC subunit apoprotein. (144 aa)
	SDI88832.1	Fe-S cluster biogenesis protein NfuA, 4Fe-4S-binding domain. (299 aa)
	gdhA	Glutamate dehydrogenase (NADP+); Belongs to the Glu/Leu/Phe/Val dehydrogenases family. (447 aa)
	SDI56126.1	Fe-S cluster biogenesis protein NfuA, 4Fe-4S-binding domain. (79 aa)
	SDI48502.1	Hypothetical protein. (620 aa)
	SDK07245.1	Glutamate synthase domain-containing protein 2; Belongs to the glutamate synthase family. (502 aa)

Your Current Organism:

Flavobacterium glycines

NCBI taxonomy Id: 551990
Other names: F. glycines, Flavobacterium glycines Madhaiyan et al. 2010, Flavobacterium sp. Gm-149, ICMP 17618, NBRC 105008, strain Gm-149

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SDI48502.1	SDJ00563.1	SAMN05192550_0014	SAMN05192550_1387	Hypothetical protein.	Dissimilatory nitrite reductase (NO-forming), copper type apoprotein.	0.618
SDJ00302.1	SDJ00563.1	SAMN05192550_1380	SAMN05192550_1387	Nitric oxide reductase, NorC subunit apoprotein.	Dissimilatory nitrite reductase (NO-forming), copper type apoprotein.	0.922
SDJ00302.1	SDJ95810.1	SAMN05192550_1380	SAMN05192550_3072	Nitric oxide reductase, NorC subunit apoprotein.	Ferredoxin-nitrate reductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.	0.436
SDJ00302.1	cycA	SAMN05192550_1380	SAMN05192550_1388	Nitric oxide reductase, NorC subunit apoprotein.	Nitrite reductase (NO-forming).	0.674
SDJ00302.1	norB	SAMN05192550_1380	SAMN05192550_1381	Nitric oxide reductase, NorC subunit apoprotein.	Nitric oxide reductase, NorB subunit apoprotein; Belongs to the heme-copper respiratory oxidase family.	0.996
SDJ00563.1	SDI48502.1	SAMN05192550_1387	SAMN05192550_0014	Dissimilatory nitrite reductase (NO-forming), copper type apoprotein.	Hypothetical protein.	0.618
SDJ00563.1	SDJ00302.1	SAMN05192550_1387	SAMN05192550_1380	Dissimilatory nitrite reductase (NO-forming), copper type apoprotein.	Nitric oxide reductase, NorC subunit apoprotein.	0.922
SDJ00563.1	SDJ00725.1	SAMN05192550_1387	SAMN05192550_1392	Dissimilatory nitrite reductase (NO-forming), copper type apoprotein.	MFS transporter, NNP family, nitrate/nitrite transporter.	0.777
SDJ00563.1	SDJ00760.1	SAMN05192550_1387	SAMN05192550_1393	Dissimilatory nitrite reductase (NO-forming), copper type apoprotein.	MFS transporter, NNP family, nitrate/nitrite transporter.	0.925
SDJ00563.1	SDJ00793.1	SAMN05192550_1387	SAMN05192550_1394	Dissimilatory nitrite reductase (NO-forming), copper type apoprotein.	Hypothetical protein.	0.591
SDJ00563.1	SDJ05549.1	SAMN05192550_1387	SAMN05192550_1527	Dissimilatory nitrite reductase (NO-forming), copper type apoprotein.	MFS transporter, NNP family, nitrate/nitrite transporter.	0.602
SDJ00563.1	SDJ11162.1	SAMN05192550_1387	SAMN05192550_1683	Dissimilatory nitrite reductase (NO-forming), copper type apoprotein.	MFS transporter, NNP family, nitrate/nitrite transporter.	0.674
SDJ00563.1	SDJ11338.1	SAMN05192550_1387	SAMN05192550_1688	Dissimilatory nitrite reductase (NO-forming), copper type apoprotein.	Nitrite reductase (NADH) large subunit.	0.897
SDJ00563.1	SDJ95810.1	SAMN05192550_1387	SAMN05192550_3072	Dissimilatory nitrite reductase (NO-forming), copper type apoprotein.	Ferredoxin-nitrate reductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.	0.918
SDJ00563.1	cycA	SAMN05192550_1387	SAMN05192550_1388	Dissimilatory nitrite reductase (NO-forming), copper type apoprotein.	Nitrite reductase (NO-forming).	0.841
SDJ00563.1	glnII	SAMN05192550_1387	SAMN05192550_3237	Dissimilatory nitrite reductase (NO-forming), copper type apoprotein.	Glutamine synthetase.	0.410
SDJ00563.1	gltA	SAMN05192550_1387	SAMN05192550_1632	Dissimilatory nitrite reductase (NO-forming), copper type apoprotein.	Glutamate synthase (NADH) large subunit.	0.675
SDJ00563.1	nasC	SAMN05192550_1387	SAMN05192550_1395	Dissimilatory nitrite reductase (NO-forming), copper type apoprotein.	Assimilatory nitrate reductase catalytic subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	0.903
SDJ00563.1	nirD-2	SAMN05192550_1387	SAMN05192550_1687	Dissimilatory nitrite reductase (NO-forming), copper type apoprotein.	Nitrite reductase (NADH) small subunit.	0.883
SDJ00563.1	norB	SAMN05192550_1387	SAMN05192550_1381	Dissimilatory nitrite reductase (NO-forming), copper type apoprotein.	Nitric oxide reductase, NorB subunit apoprotein; Belongs to the heme-copper respiratory oxidase family.	0.982

page 1 of 11

Server load: low (32%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2025

Credits

Access

Info

About