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| | EEB66282.1 | Tetratricopeptide repeat protein; Identified by match to protein family HMM PF07719. (446 aa) |
| | yocK | Hypothetical protein. (126 aa) |
| | EEB66292.1 | Peptidase dimerization domain protein; Identified by match to protein family HMM PF01546; match to protein family HMM PF07687. (461 aa) |
| | EEB66399.1 | Glycosyl hydrolase family 20, catalytic domain protein; Identified by match to protein family HMM PF00728; match to protein family HMM PF00754. (772 aa) |
| | pyk | Pyruvate kinase; Identified by match to protein family HMM PF00224; match to protein family HMM PF02887; match to protein family HMM TIGR01064; Belongs to the pyruvate kinase family. (488 aa) |
| | EEB66314.1 | Phospholipase, patatin family; Identified by match to protein family HMM PF01734. (250 aa) |
| | ribD | Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family. (323 aa) |
| | msrB | methionine-R-sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. (382 aa) |
| | rnz | Putative ribonuclease Z; Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA; Belongs to the RNase Z family. (304 aa) |
| | EEB66414.1 | Hypothetical protein. (1076 aa) |
| | EEB64514.1 | Prokaryotic diacylglycerol kinase; Identified by match to protein family HMM PF01219. (121 aa) |
| | raiA | Putative ribosomal subunit interface protein. (96 aa) |
| | EEB64515.1 | Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515. (832 aa) |
| | EEB64503.1 | Identified by match to protein family HMM PF03235. (367 aa) |
| | rpmI | Ribosomal protein L35; Identified by match to protein family HMM PF01632; match to protein family HMM TIGR00001; Belongs to the bacterial ribosomal protein bL35 family. (65 aa) |
| | rplT | Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. (114 aa) |
| | EEB64359.1 | Oxidoreductase, short chain dehydrogenase/reductase family protein; Identified by match to protein family HMM PF00106; match to protein family HMM PF01370; match to protein family HMM PF08659; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (267 aa) |
| | hemB | Porphobilinogen synthase; Identified by match to protein family HMM PF00490; Belongs to the ALAD family. (328 aa) |
| | EEB65194.1 | O-Glycosyl hydrolase family 30; Identified by match to protein family HMM PF02055; Belongs to the glycosyl hydrolase 30 family. (476 aa) |
| | EEB65192.1 | Hypothetical protein. (661 aa) |
| | EEB65205.1 | Hypothetical protein. (462 aa) |
| | EEB64796.1 | Glycosyl hydrolase family 20, catalytic domain protein; Identified by match to protein family HMM PF00728; match to protein family HMM PF02838. (776 aa) |
| | EEB64814.1 | Identified by match to protein family HMM PF07980. (557 aa) |
| | EEB64807.1 | Identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180; Belongs to the ParB family. (310 aa) |
| | EEB64803.1 | DNA-binding protein, YbaB/EbfC family; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. (101 aa) |
| | pruA | 1-pyrroline-5-carboxylate dehydrogenase; Identified by match to protein family HMM PF00171; match to protein family HMM TIGR01236. (541 aa) |
| | EEB64995.1 | Peptidase C1-like family; Belongs to the peptidase C1 family. (393 aa) |
| | EEB64994.1 | Metallo-beta-lactamase domain protein; Identified by match to protein family HMM PF00753; Belongs to the UPF0173 family. (235 aa) |
| | rpmF | Ribosomal protein L32; Identified by match to protein family HMM PF01783; match to protein family HMM TIGR01031; Belongs to the bacterial ribosomal protein bL32 family. (64 aa) |
| | EEB64985.1 | Response regulator receiver domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486. (249 aa) |
| | EEB64996.1 | Hypothetical protein. (331 aa) |
| | EEB65033.1 | Molybdenum cofactor synthesis domain protein; Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP. Belongs to the MoeA family. (394 aa) |
| | moaE | Molybdopterin converting factor, subunit 2; Identified by match to protein family HMM PF02391. (142 aa) |
| | EEB65024.1 | Identified by match to protein family HMM PF00899; match to protein family HMM PF05237. (357 aa) |
| | dnaG | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Belongs to the DnaG primase family. (656 aa) |
| | EEB64738.1 | Hypothetical protein. (143 aa) |
| | EEB66855.1 | Hypothetical protein. (105 aa) |
| | EEB66927.1 | ATPase family associated with various cellular activities (AAA); Identified by match to protein family HMM PF07728. (361 aa) |
| | EEB66975.1 | Hypothetical protein; Overlaps another CDS with the same product name; identified by match to protein family HMM PF01926. (562 aa) |
| | EEB66788.1 | Hypothetical protein. (264 aa) |
| | EEB67016.1 | Glycosyl hydrolase family 20, catalytic domain protein; Identified by match to protein family HMM PF00728. (480 aa) |
| | EEB66866.1 | Identified by match to protein family HMM PF00691. (290 aa) |
| | EEB66950.1 | Identified by match to protein family HMM PF00149. (270 aa) |
| | ilvE | Branched-chain-amino-acid transaminase; Identified by match to protein family HMM PF01063; match to protein family HMM TIGR01123. (350 aa) |
| | dnaB-2 | Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily. (524 aa) |
| | EEB66959.1 | Identified by match to protein family HMM PF00581. (207 aa) |
| | fabG | 3-oxoacyl-[acyl-carrier-protein] reductase; Catalyzes the NADPH-dependent reduction of beta-ketoacyl-ACP substrates to beta-hydroxyacyl-ACP products, the first reductive step in the elongation cycle of fatty acid biosynthesis. Belongs to the short-chain dehydrogenases/reductases (SDR) family. (248 aa) |
| | EEB66956.1 | NAD dependent epimerase/dehydratase family protein; Identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF07993. (332 aa) |
| | EEB66779.1 | FAD dependent oxidoreductase; Identified by match to protein family HMM PF01266; match to protein family HMM PF01494; match to protein family HMM PF04820. (417 aa) |
| | pdxB-3 | 4-phosphoerythronate dehydrogenase; Identified by match to protein family HMM PF00389; match to protein family HMM PF02826; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. (321 aa) |
| | serC | Putative phosphoserine transaminase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily. (353 aa) |
| | rpsO | Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. (89 aa) |
| | EEB66971.1 | Cytidine and deoxycytidylate deaminase zinc-binding region; Identified by match to protein family HMM PF00383. (146 aa) |
| | ribF | Riboflavin biosynthesis protein RibF; Identified by match to protein family HMM PF01467; match to protein family HMM PF01687; match to protein family HMM PF06574; match to protein family HMM TIGR00083; Belongs to the ribF family. (308 aa) |
| | EEB66841.1 | AMP-binding enzyme; Identified by match to protein family HMM PF00501. (590 aa) |
| | EEB66832.1 | FAD dependent oxidoreductase; Identified by match to protein family HMM PF01266; match to protein family HMM PF01593. (499 aa) |
| | EEB64587.1 | Hypothetical protein; Identified by glimmer; putative. (723 aa) |
| | rpsB | Ribosomal protein S2; Identified by match to protein family HMM PF00318; match to protein family HMM TIGR01011; Belongs to the universal ribosomal protein uS2 family. (241 aa) |
| | rpsI | Ribosomal protein S9; Identified by match to protein family HMM PF00380; Belongs to the universal ribosomal protein uS9 family. (128 aa) |
| | rplM | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. (151 aa) |
| | EEB64570.1 | Transketolase, thiamine diphosphate binding domain protein; Identified by match to protein family HMM PF00456. (280 aa) |
| | EEB64564.1 | Restriction endonuclease; Identified by match to protein family HMM PF04471. (301 aa) |
| | EEB64750.1 | SPFH/Band 7/PHB domain protein; Identified by match to protein family HMM PF01145. (499 aa) |
| | EEB64757.1 | Hypothetical protein. (220 aa) |
| | dtd | D-tyrosyl-tRNA(Tyr) deacylase; An aminoacyl-tRNA editing enzyme that deacylates mischarged D-aminoacyl-tRNAs. Also deacylates mischarged glycyl-tRNA(Ala), protecting cells against glycine mischarging by AlaRS. Acts via tRNA- based rather than protein-based catalysis; rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D- aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl- tRNA entities in vivo and helps enforce protein L-homochirality. Belongs to the DTD family. (151 aa) |
| | rpsF | Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. (113 aa) |
| | rpsR | Ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family. (92 aa) |
| | EEB65951.1 | Pyridoxal-dependent decarboxylase, C-terminal sheet domain protein; Identified by match to protein family HMM PF00278; match to protein family HMM PF02784. (463 aa) |
| | EEB66070.1 | Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719. (412 aa) |
| | truA | tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs. (250 aa) |
| | EEB66018.1 | F5/8 type C domain protein; Identified by match to protein family HMM PF00754. (689 aa) |
| | etfA | Electron transfer flavoprotein FAD-binding domain protein; Identified by match to protein family HMM PF00766; match to protein family HMM PF01012. (316 aa) |
| | rplS | Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. (115 aa) |
| | ackA | Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family. (401 aa) |
| | EEB65970.1 | Hypothetical protein. (399 aa) |
| | EEB65967.1 | Hypothetical protein. (111 aa) |
| | EEB66039.1 | Phospholipase, patatin family; Identified by match to protein family HMM PF01734. (741 aa) |
| | speB | Agmatinase; Identified by match to protein family HMM PF00491; match to protein family HMM TIGR01230; Belongs to the arginase family. (290 aa) |
| | EEB66064.1 | Aminotransferase, class I/II; Identified by match to protein family HMM PF00155. (396 aa) |
| | recN | DNA repair protein RecN; May be involved in recombinational repair of damaged DNA. (552 aa) |
| | EEB66024.1 | Aminotransferase, class V; Identified by match to protein family HMM PF00266. (384 aa) |
| | fabG_1 | Oxidoreductase, short chain dehydrogenase/reductase family protein; Identified by match to protein family HMM PF00106; match to protein family HMM PF08659; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (226 aa) |
| | EEB66012.1 | Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719. (447 aa) |
| | EEB65929.1 | Hypothetical protein; Identified by glimmer; putative. (232 aa) |
| | dnaB | Replicative DNA helicase; Identified by match to protein family HMM PF00772; match to protein family HMM PF03796. (444 aa) |
| | GldJ | Gliding motility-associated lipoprotein GldJ; Identified by match to protein family HMM PF03781; match to protein family HMM TIGR03524. (549 aa) |
| | tsaA | Antioxidant, AhpC/TSA family; Identified by match to protein family HMM PF00578; match to protein family HMM PF08534. (211 aa) |
| | EEB65725.1 | DNA (cytosine-5-)-methyltransferase; Identified by match to protein family HMM PF01555; Belongs to the N(4)/N(6)-methyltransferase family. (265 aa) |
| | glnA | Glutamate--ammonia ligase, catalytic domain protein; Identified by match to protein family HMM PF00120; Belongs to the glutamine synthetase family. (723 aa) |
| | EEB65682.1 | Type III restriction enzyme, res subunit; Identified by match to protein family HMM PF04851. (838 aa) |
| | EEB65629.1 | Oxidoreductase NAD-binding domain protein; Identified by match to protein family HMM PF00175; match to protein family HMM PF00970. (742 aa) |
| | rpmJ | Ribosomal protein L36; Identified by match to protein family HMM PF00444; match to protein family HMM TIGR01022; Belongs to the bacterial ribosomal protein bL36 family. (38 aa) |
| | EEB65707.1 | Prephenate dehydratase; Identified by match to protein family HMM PF00800; match to protein family HMM PF01842. (280 aa) |
| | rpsU | Ribosomal protein S21; Identified by match to protein family HMM PF01165; match to protein family HMM TIGR00030; Belongs to the bacterial ribosomal protein bS21 family. (64 aa) |
| | EEB65713.1 | Transketolase, pyridine binding domain protein; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2. (325 aa) |
| | EEB65722.1 | Putative queuosine biosynthesis protein QueD; Identified by match to protein family HMM PF01242. (150 aa) |
| | gldK | Gliding motility-associated lipoprotein GldK; Identified by match to protein family HMM PF03781; match to protein family HMM TIGR03525. (456 aa) |
| | lpxA | acyl-[acyl-carrier-protein]-UDP-N- acetylglucosamine O-acyltransferase; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. (264 aa) |
| | EEB64686.1 | HD domain protein; Identified by match to protein family HMM PF01966. (405 aa) |
| | EEB64678.1 | ADP-ribosylglycohydrolase; Identified by match to protein family HMM PF03747. (263 aa) |
| | dck | Deoxynucleoside kinase; Identified by match to protein family HMM PF01712. (204 aa) |
| | EEB66441.1 | Helicase C-terminal domain protein; Identified by match to protein family HMM PF00271; match to protein family HMM PF01807; match to protein family HMM PF02384; match to protein family HMM PF04851. (2020 aa) |
| | EEB66464.1 | DNA topoisomerase; Identified by match to protein family HMM PF01131; match to protein family HMM PF01751. (710 aa) |
| | EEB66425.1 | Hypothetical protein. (443 aa) |
| | EEB66468.1 | Hypothetical protein. (146 aa) |
| | EEB66525.1 | Identified by match to protein family HMM PF00378. (255 aa) |
| | EEB66437.1 | Acetyl-CoA hydrolase/transferase; Identified by match to protein family HMM PF02550. (422 aa) |
| | EEB66469.1 | Identified by match to protein family HMM PF00149. (403 aa) |
| | cutC | CutC family protein; Participates in the control of copper homeostasis. Belongs to the CutC family. (238 aa) |
| | tadA_1 | Cytidine and deoxycytidylate deaminase zinc-binding region; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family. (144 aa) |
| | EEB66470.1 | Identified by match to protein family HMM PF03781. (232 aa) |
| | cdd | Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. (160 aa) |
| | lldD | Dehydrogenase, FMN-dependent; Identified by match to protein family HMM PF01070. (391 aa) |
| | EEB66500.1 | DHHA1 domain protein; Identified by match to protein family HMM PF01368; match to protein family HMM PF02272. (342 aa) |
| | EEB66564.1 | ATP-dependent DNA helicase, RecQ family; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM TIGR00614. (632 aa) |
| | EEB66570.1 | Putative CDP-diacylglycerol-serine O-phosphatidyltransferase; Identified by match to protein family HMM PF01066; Belongs to the CDP-alcohol phosphatidyltransferase class-I family. (234 aa) |
| | EEB66537.1 | Peptidyl-prolyl cis-trans isomerase, FKBP-type; Identified by match to protein family HMM PF00254. (192 aa) |
| | mgtE | Magnesium transporter; Acts as a magnesium transporter. (451 aa) |
| | EEB66499.1 | Identified by match to protein family HMM PF01106; match to protein family HMM PF08712. (300 aa) |
| | ychF | GTP-binding protein YchF; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner. (363 aa) |
| | rpsP | Ribosomal protein S16; Identified by match to protein family HMM PF00886; match to protein family HMM TIGR00002; Belongs to the bacterial ribosomal protein bS16 family. (177 aa) |
| | nadD | Nicotinate-nucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD). (194 aa) |
| | EEB66146.1 | Hypothetical protein. (360 aa) |
| | EEB66235.1 | Pyridine nucleotide-disulfide oxidoreductase; Identified by match to protein family HMM PF00070; match to protein family HMM PF07992. (424 aa) |
| | rplY | Ribosomal protein L25, Ctc-form; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily. (199 aa) |
| | EEB66186.1 | Proline dehydrogenase; Identified by match to protein family HMM PF01619. (393 aa) |
| | EEB66150.1 | Identified by match to protein family HMM PF00149. (390 aa) |
| | ybeY | Translation metalloprotein YbeY; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. (139 aa) |
| | hflB | ATP-dependent metallopeptidase HflB; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family. (655 aa) |
| | EEB66117.1 | Hypothetical protein. (372 aa) |
| | EEB66192.1 | Isochorismate synthase; Identified by match to protein family HMM PF00425; match to protein family HMM TIGR00543. (355 aa) |
| | priA | Primosomal protein N; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. (816 aa) |
| | udk | Uridine kinase; Identified by match to protein family HMM PF00485; match to protein family HMM TIGR00235. (204 aa) |
| | EEB66079.1 | Peptidase, M48 family; Identified by match to protein family HMM PF01435. (260 aa) |
| | recQ | ATP-dependent DNA helicase RecQ; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF00570; match to protein family HMM PF09382; match to protein family HMM TIGR00614; match to protein family HMM TIGR01389. (727 aa) |
| | EEB64405.1 | Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719. (304 aa) |
| | EEB64406.1 | Hypothetical protein. (585 aa) |
| | EEB64404.1 | Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00018; match to protein family HMM PF00515; match to protein family HMM PF07653; match to protein family HMM PF07719; match to protein family HMM PF08239. (252 aa) |
| | EEB66588.1 | Hypothetical protein. (182 aa) |
| | EEB66672.1 | hydroxymethylglutaryl-CoA reductase, degradative; Identified by match to protein family HMM TIGR00532; Belongs to the HMG-CoA reductase family. (433 aa) |
| | EEB66697.1 | Identified by match to protein family HMM PF00881. (170 aa) |
| | EEB66639.1 | Hypothetical protein. (239 aa) |
| | EEB66614.1 | Class II glutamine amidotransferase; Identified by match to protein family HMM PF00310. (628 aa) |
| | recF | DNA replication and repair protein RecF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP; Belongs to the RecF family. (360 aa) |
| | EEB66651.1 | Peptidase, S9A/B/C family, catalytic domain protein; Identified by match to protein family HMM PF00326; match to protein family HMM PF00930. (731 aa) |
| | EEB66628.1 | acyl-CoA dehydrogenase, C-terminal domain protein; Identified by match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028. (381 aa) |
| | EEB64664.1 | Histidine triad domain protein; Identified by match to protein family HMM PF01230. (128 aa) |
| | EEB64524.1 | Hypothetical protein. (347 aa) |
| | rpsT | Ribosomal protein S20; Binds directly to 16S ribosomal RNA. (85 aa) |
| | dnaJ | Chaperone protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...] (372 aa) |
| | hemA | glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA). (416 aa) |
| | EEB65539.1 | Amidinotransferase; Identified by match to protein family HMM PF02274. (306 aa) |
| | rplU | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. (104 aa) |
| | EEB65566.1 | Hypothetical protein. (132 aa) |
| | EEB65585.1 | DEAD/DEAH box helicase; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; Belongs to the DEAD box helicase family. (584 aa) |
| | hup-2 | DNA-binding protein HU; Identified by match to protein family HMM PF00216; Belongs to the bacterial histone-like protein family. (116 aa) |
| | EEB65526.1 | Oxidoreductase, short chain dehydrogenase/reductase family protein; Identified by match to protein family HMM PF00106; match to protein family HMM PF01370; match to protein family HMM PF08659. (248 aa) |
| | rplL | Ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family. (126 aa) |
| | rplJ | Ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. (171 aa) |
| | rplA | Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. (229 aa) |
| | rplK | Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. (145 aa) |
| | EEB65384.1 | Recombination factor protein RarA; Identified by match to protein family HMM PF00004. (425 aa) |
| | yrrK | RNAse H domain protein, YqgF family; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. (136 aa) |
| | EEB65481.1 | Peptidase, M48 family; Identified by match to protein family HMM PF01435. (270 aa) |
| | sbcD | Exonuclease SbcCD, D subunit; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family. (407 aa) |
| | hemH | Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family. (344 aa) |
| | bioB | Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family. (377 aa) |
| | EEB65393.1 | Bacterial transferase hexapeptide repeat protein; Identified by match to protein family HMM PF00132. (169 aa) |
| | EEB65382.1 | HYR domain protein; Identified by match to protein family HMM PF02494. (4061 aa) |
| | EEB65399.1 | Glycosyl hydrolase family 20, catalytic domain protein; Identified by match to protein family HMM PF00728. (643 aa) |
| | EEB65475.1 | Homoserine dehydrogenase; Identified by match to protein family HMM PF00696; match to protein family HMM PF00742; match to protein family HMM PF03447; match to protein family HMM TIGR00657. (803 aa) |
| | EEB65411.1 | Hypothetical protein. (471 aa) |
| | folK | 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase; Identified by match to protein family HMM PF01288; match to protein family HMM PF01712; match to protein family HMM TIGR01498. (375 aa) |
| | EEB65130.1 | FAH family protein; Identified by match to protein family HMM PF01557. (203 aa) |
| | EEB65153.1 | AMP-binding enzyme; Identified by match to protein family HMM PF00501. (599 aa) |
| | EEB65179.1 | SNF2 family N-terminal domain protein; Identified by match to protein family HMM PF00176; match to protein family HMM PF00271; match to protein family HMM PF04851. (951 aa) |
| | EEB65175.1 | Metallo-beta-lactamase domain protein; Identified by match to protein family HMM PF00753. (253 aa) |
| | rpmH | Ribosomal protein L34; Identified by match to protein family HMM PF00468; match to protein family HMM TIGR01030; Belongs to the bacterial ribosomal protein bL34 family. (52 aa) |
| | EEB65913.1 | Hypothetical protein. (46 aa) |
| | rpsL | Ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. (137 aa) |
| | rpsG | Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. (158 aa) |
| | rpsJ | Ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. (103 aa) |
| | rplC | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. (225 aa) |
| | rplD | 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel. (209 aa) |
| | rplW | Ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. (95 aa) |
| | rplB | Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. (275 aa) |
| | rpsS | Ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. (92 aa) |
| | rplV | Ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. (136 aa) |
| | rpsC | Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. (246 aa) |
| | rplP | Ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. (139 aa) |
| | rpsQ | 30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. (85 aa) |
| | rplN | Ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. (122 aa) |
| | rplE | Ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. (183 aa) |
| | rpsN | Ribosomal protein S14p/S29e; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family. (89 aa) |
| | rpsH | Ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. (132 aa) |
| | rplF | Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. (180 aa) |
| | rplR | Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. (118 aa) |
| | rpsE | Ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. (174 aa) |
| | rpmD | Ribosomal protein L30; Identified by match to protein family HMM PF00327; match to protein family HMM TIGR01308. (60 aa) |
| | rplO | Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. (150 aa) |
| | rpsM | 30S ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family. (124 aa) |
| | rpsK | 30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. (133 aa) |
| | rpsD | Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. (201 aa) |
| | rplQ | Ribosomal protein L17; Identified by match to protein family HMM PF01196; match to protein family HMM TIGR00059. (163 aa) |
| | sufD | FeS assembly protein SufD; Identified by match to protein family HMM PF01458; match to protein family HMM TIGR01981. (433 aa) |
| | sufC | FeS assembly ATPase SufC; Identified by match to protein family HMM PF00005; match to protein family HMM TIGR01978. (246 aa) |
| | EEB65845.1 | Isoprenylcysteine carboxyl methyltransferase family protein. (151 aa) |
| | kptA | RNA 2'-phosphotransferase, Tpt1/KptA family; Removes the 2'-phosphate from RNA via an intermediate in which the phosphate is ADP-ribosylated by NAD followed by a presumed transesterification to release the RNA and generate ADP-ribose 1''-2''- cyclic phosphate (APPR>P). May function as an ADP-ribosylase. (185 aa) |
| | EEB65813.1 | Identified by match to protein family HMM PF03061. (186 aa) |
| | EEB65786.1 | Identified by match to protein family HMM PF04536. (375 aa) |
| | fhs | Formate--tetrahydrofolate ligase; Identified by match to protein family HMM PF01268; Belongs to the formate--tetrahydrofolate ligase family. (555 aa) |
| | lysA | Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine. (398 aa) |
| | EEB65258.1 | Hypothetical protein; Identified by glimmer; putative. (1006 aa) |
| | sufB | FeS assembly protein SufB; Identified by match to protein family HMM PF01458; match to protein family HMM TIGR01980. (489 aa) |
| | EEB65256.1 | Cation diffusion facilitator family transporter; Identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family. (325 aa) |
| | rpmE | Ribosomal protein L31; Identified by match to protein family HMM PF01197; match to protein family HMM TIGR00105; Belongs to the bacterial ribosomal protein bL31 family. (83 aa) |
| | EEB65043.1 | Glutamine cyclotransferase; Identified by match to protein family HMM PF05096. (353 aa) |
| | cobB | Transcriptional regulator, Sir2 family; Identified by match to protein family HMM PF02146; Belongs to the sirtuin family. Class III subfamily. (229 aa) |
| | hup | DNA-binding protein HU; Identified by match to protein family HMM PF00216; Belongs to the bacterial histone-like protein family. (92 aa) |
| | rpmB | Ribosomal protein L28; Identified by match to protein family HMM PF00830; match to protein family HMM TIGR00009; Belongs to the bacterial ribosomal protein bL28 family. (78 aa) |
| | rpmG | Ribosomal protein L33; Identified by match to protein family HMM PF00471; match to protein family HMM TIGR01023; Belongs to the bacterial ribosomal protein bL33 family. (60 aa) |
| | EEB65051.1 | Identified by match to protein family HMM PF08020. (168 aa) |
| | EEB65083.1 | 6-O-methylguanine DNA methyltransferase, DNA binding domain protein; Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated. (154 aa) |
| | recO | DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. (238 aa) |
| | pdhA | Pyruvate dehydrogenase E1 component, alpha subunit; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). (332 aa) |
| | EEB64960.1 | Glycosyl hydrolase family 20, catalytic domain protein; Identified by match to protein family HMM PF00728. (779 aa) |
| | EEB64943.1 | ATPase family associated with various cellular activities (AAA); Identified by match to protein family HMM PF07726; match to protein family HMM PF07728. (333 aa) |
| | nth | Putative endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. (209 aa) |
| | EEB64931.1 | Tat pathway signal sequence domain protein; Identified by match to protein family HMM PF00149; match to protein family HMM TIGR01409; Belongs to the 5'-nucleotidase family. (304 aa) |
| | EEB66402.1 | Hypothetical protein. (180 aa) |
| | EEB66341.1 | Hypothetical protein. (183 aa) |
| | EEB66367.1 | NAD dependent epimerase/dehydratase family protein; Identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF05368; match to protein family HMM PF07993. (292 aa) |
| | EEB66276.1 | NAD dependent epimerase/dehydratase family protein; Identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321. (284 aa) |
| | EEB66285.1 | Peptidase, S9A/B/C family, catalytic domain protein; Identified by match to protein family HMM PF00326; match to protein family HMM PF00930. (709 aa) |
| | EEB66377.1 | SPFH/Band 7/PHB domain protein; Identified by match to protein family HMM PF01145. (303 aa) |
| | EEB65323.1 | Hypothetical protein. (174 aa) |
| | EEB65320.1 | Metallo-beta-lactamase domain protein; Identified by match to protein family HMM PF00753. (226 aa) |
| | radC | DNA repair protein RadC; Identified by match to protein family HMM PF04002; match to protein family HMM TIGR00608; Belongs to the UPF0758 family. (221 aa) |
| | purD | Phosphoribosylamine--glycine ligase; Identified by match to protein family HMM PF01071; match to protein family HMM PF02655; match to protein family HMM PF02843; match to protein family HMM PF02844; match to protein family HMM TIGR00877; Belongs to the GARS family. (424 aa) |
| | EEB65356.1 | Hypothetical protein. (388 aa) |
| | EEB65381.1 | Hypothetical protein; Identified by glimmer; putative. (384 aa) |
| | EEB65345.1 | Hypothetical protein; Identified by glimmer; putative. (388 aa) |
