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| | EEB64515.1 | Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515. (832 aa) |
| | raiA | Putative ribosomal subunit interface protein. (96 aa) |
| | EEB64514.1 | Prokaryotic diacylglycerol kinase; Identified by match to protein family HMM PF01219. (121 aa) |
| | yocK | Hypothetical protein. (126 aa) |
| | EEB66282.1 | Tetratricopeptide repeat protein; Identified by match to protein family HMM PF07719. (446 aa) |
| | EEB66341.1 | Hypothetical protein. (183 aa) |
| | nth | Putative endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. (209 aa) |
| | EEB64943.1 | ATPase family associated with various cellular activities (AAA); Identified by match to protein family HMM PF07726; match to protein family HMM PF07728. (333 aa) |
| | recO | DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. (238 aa) |
| | rpmG | Ribosomal protein L33; Identified by match to protein family HMM PF00471; match to protein family HMM TIGR01023; Belongs to the bacterial ribosomal protein bL33 family. (60 aa) |
| | rpmB | Ribosomal protein L28; Identified by match to protein family HMM PF00830; match to protein family HMM TIGR00009; Belongs to the bacterial ribosomal protein bL28 family. (78 aa) |
| | hup | DNA-binding protein HU; Identified by match to protein family HMM PF00216; Belongs to the bacterial histone-like protein family. (92 aa) |
| | cobB | Transcriptional regulator, Sir2 family; Identified by match to protein family HMM PF02146; Belongs to the sirtuin family. Class III subfamily. (229 aa) |
| | rpmE | Ribosomal protein L31; Identified by match to protein family HMM PF01197; match to protein family HMM TIGR00105; Belongs to the bacterial ribosomal protein bL31 family. (83 aa) |
| | EEB65786.1 | Identified by match to protein family HMM PF04536. (375 aa) |
| | rplQ | Ribosomal protein L17; Identified by match to protein family HMM PF01196; match to protein family HMM TIGR00059. (163 aa) |
| | rpsK | 30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. (133 aa) |
| | rplO | Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. (150 aa) |
| | rpmD | Ribosomal protein L30; Identified by match to protein family HMM PF00327; match to protein family HMM TIGR01308. (60 aa) |
| | rpsE | Ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. (174 aa) |
| | rplR | Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. (118 aa) |
| | rpsH | Ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. (132 aa) |
| | rpsN | Ribosomal protein S14p/S29e; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family. (89 aa) |
| | rplE | Ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. (183 aa) |
| | rplN | Ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. (122 aa) |
| | rpsQ | 30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. (85 aa) |
| | rpsC | Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. (246 aa) |
| | rpsS | Ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. (92 aa) |
| | rplB | Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. (275 aa) |
| | rplW | Ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. (95 aa) |
| | rplC | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. (225 aa) |
| | rpsJ | Ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. (103 aa) |
| | rpsG | Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. (158 aa) |
| | rpmH | Ribosomal protein L34; Identified by match to protein family HMM PF00468; match to protein family HMM TIGR01030; Belongs to the bacterial ribosomal protein bL34 family. (52 aa) |
| | EEB65179.1 | SNF2 family N-terminal domain protein; Identified by match to protein family HMM PF00176; match to protein family HMM PF00271; match to protein family HMM PF04851. (951 aa) |
| | EEB65153.1 | AMP-binding enzyme; Identified by match to protein family HMM PF00501. (599 aa) |
| | EEB65393.1 | Bacterial transferase hexapeptide repeat protein; Identified by match to protein family HMM PF00132. (169 aa) |
| | EEB65384.1 | Recombination factor protein RarA; Identified by match to protein family HMM PF00004. (425 aa) |
| | rplJ | Ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. (171 aa) |
| | rplL | Ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family. (126 aa) |
| | hup-2 | DNA-binding protein HU; Identified by match to protein family HMM PF00216; Belongs to the bacterial histone-like protein family. (116 aa) |
| | EEB65585.1 | DEAD/DEAH box helicase; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; Belongs to the DEAD box helicase family. (584 aa) |
| | rplU | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. (104 aa) |
| | rpsT | Ribosomal protein S20; Binds directly to 16S ribosomal RNA. (85 aa) |
| | recF | DNA replication and repair protein RecF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP; Belongs to the RecF family. (360 aa) |
| | EEB66697.1 | Identified by match to protein family HMM PF00881. (170 aa) |
| | EEB66588.1 | Hypothetical protein. (182 aa) |
| | EEB64404.1 | Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00018; match to protein family HMM PF00515; match to protein family HMM PF07653; match to protein family HMM PF07719; match to protein family HMM PF08239. (252 aa) |
| | EEB64406.1 | Hypothetical protein. (585 aa) |
| | EEB64405.1 | Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719. (304 aa) |
| | recQ | ATP-dependent DNA helicase RecQ; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF00570; match to protein family HMM PF09382; match to protein family HMM TIGR00614; match to protein family HMM TIGR01389. (727 aa) |
| | udk | Uridine kinase; Identified by match to protein family HMM PF00485; match to protein family HMM TIGR00235. (204 aa) |
| | priA | Primosomal protein N; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. (816 aa) |
| | rplY | Ribosomal protein L25, Ctc-form; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily. (199 aa) |
| | rpsP | Ribosomal protein S16; Identified by match to protein family HMM PF00886; match to protein family HMM TIGR00002; Belongs to the bacterial ribosomal protein bS16 family. (177 aa) |
| | EEB66564.1 | ATP-dependent DNA helicase, RecQ family; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM TIGR00614. (632 aa) |
| | EEB66500.1 | DHHA1 domain protein; Identified by match to protein family HMM PF01368; match to protein family HMM PF02272. (342 aa) |
| | cutC | CutC family protein; Participates in the control of copper homeostasis. Belongs to the CutC family. (238 aa) |
| | EEB66469.1 | Identified by match to protein family HMM PF00149. (403 aa) |
| | EEB66525.1 | Identified by match to protein family HMM PF00378. (255 aa) |
| | EEB66468.1 | Hypothetical protein. (146 aa) |
| | EEB66425.1 | Hypothetical protein. (443 aa) |
| | EEB66464.1 | DNA topoisomerase; Identified by match to protein family HMM PF01131; match to protein family HMM PF01751. (710 aa) |
| | EEB66441.1 | Helicase C-terminal domain protein; Identified by match to protein family HMM PF00271; match to protein family HMM PF01807; match to protein family HMM PF02384; match to protein family HMM PF04851. (2020 aa) |
| | EEB64678.1 | ADP-ribosylglycohydrolase; Identified by match to protein family HMM PF03747. (263 aa) |
| | EEB64686.1 | HD domain protein; Identified by match to protein family HMM PF01966. (405 aa) |
| | rpsU | Ribosomal protein S21; Identified by match to protein family HMM PF01165; match to protein family HMM TIGR00030; Belongs to the bacterial ribosomal protein bS21 family. (64 aa) |
| | rpmJ | Ribosomal protein L36; Identified by match to protein family HMM PF00444; match to protein family HMM TIGR01022; Belongs to the bacterial ribosomal protein bL36 family. (38 aa) |
| | EEB65629.1 | Oxidoreductase NAD-binding domain protein; Identified by match to protein family HMM PF00175; match to protein family HMM PF00970. (742 aa) |
| | EEB65725.1 | DNA (cytosine-5-)-methyltransferase; Identified by match to protein family HMM PF01555; Belongs to the N(4)/N(6)-methyltransferase family. (265 aa) |
| | dnaB | Replicative DNA helicase; Identified by match to protein family HMM PF00772; match to protein family HMM PF03796. (444 aa) |
| | EEB65929.1 | Hypothetical protein; Identified by glimmer; putative. (232 aa) |
| | EEB66012.1 | Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719. (447 aa) |
| | recN | DNA repair protein RecN; May be involved in recombinational repair of damaged DNA. (552 aa) |
| | EEB65970.1 | Hypothetical protein. (399 aa) |
| | ackA | Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family. (401 aa) |
| | EEB66070.1 | Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719. (412 aa) |
| | rpsR | Ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family. (92 aa) |
| | rpsF | Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. (113 aa) |
| | dtd | D-tyrosyl-tRNA(Tyr) deacylase; An aminoacyl-tRNA editing enzyme that deacylates mischarged D-aminoacyl-tRNAs. Also deacylates mischarged glycyl-tRNA(Ala), protecting cells against glycine mischarging by AlaRS. Acts via tRNA- based rather than protein-based catalysis; rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D- aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl- tRNA entities in vivo and helps enforce protein L-homochirality. Belongs to the DTD family. (151 aa) |
| | EEB64564.1 | Restriction endonuclease; Identified by match to protein family HMM PF04471. (301 aa) |
| | rplM | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. (151 aa) |
| | rpsI | Ribosomal protein S9; Identified by match to protein family HMM PF00380; Belongs to the universal ribosomal protein uS9 family. (128 aa) |
| | rpsB | Ribosomal protein S2; Identified by match to protein family HMM PF00318; match to protein family HMM TIGR01011; Belongs to the universal ribosomal protein uS2 family. (241 aa) |
| | EEB66832.1 | FAD dependent oxidoreductase; Identified by match to protein family HMM PF01266; match to protein family HMM PF01593. (499 aa) |
| | EEB66841.1 | AMP-binding enzyme; Identified by match to protein family HMM PF00501. (590 aa) |
| | EEB66971.1 | Cytidine and deoxycytidylate deaminase zinc-binding region; Identified by match to protein family HMM PF00383. (146 aa) |
| | rpsO | Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. (89 aa) |
| | dnaB-2 | Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily. (524 aa) |
| | EEB66866.1 | Identified by match to protein family HMM PF00691. (290 aa) |
| | EEB66927.1 | ATPase family associated with various cellular activities (AAA); Identified by match to protein family HMM PF07728. (361 aa) |
| | EEB64738.1 | Hypothetical protein. (143 aa) |
| | dnaG | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Belongs to the DnaG primase family. (656 aa) |
| | EEB65033.1 | Molybdenum cofactor synthesis domain protein; Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP. Belongs to the MoeA family. (394 aa) |
| | EEB64996.1 | Hypothetical protein. (331 aa) |
| | rpmF | Ribosomal protein L32; Identified by match to protein family HMM PF01783; match to protein family HMM TIGR01031; Belongs to the bacterial ribosomal protein bL32 family. (64 aa) |
| | EEB64803.1 | DNA-binding protein, YbaB/EbfC family; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. (101 aa) |
| | EEB64807.1 | Identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180; Belongs to the ParB family. (310 aa) |
| | EEB65205.1 | Hypothetical protein. (462 aa) |
| | rpmI | Ribosomal protein L35; Identified by match to protein family HMM PF01632; match to protein family HMM TIGR00001; Belongs to the bacterial ribosomal protein bL35 family. (65 aa) |
| | radC | DNA repair protein RadC; Identified by match to protein family HMM PF04002; match to protein family HMM TIGR00608; Belongs to the UPF0758 family. (221 aa) |
