(6 nodes) Mixed, incl. L28p-like, and Zinc-binding ribosomal protein network (Corynebacterium matruchotii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rpmF	Ribosomal protein L32; Identified by match to protein family HMM PF01783; match to protein family HMM TIGR01031; Belongs to the bacterial ribosomal protein bL32 family. (57 aa)
	rpmE	Ribosomal protein L31; Identified by match to protein family HMM PF01197; match to protein family HMM TIGR00105. (88 aa)
	rpmB	Ribosomal protein L28; Identified by match to protein family HMM PF00830; match to protein family HMM TIGR00009; Belongs to the bacterial ribosomal protein bL28 family. (111 aa)
	tuf	Translation elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. (397 aa)
	rpsP	Ribosomal protein S16; Identified by match to protein family HMM PF00886; match to protein family HMM TIGR00002; Belongs to the bacterial ribosomal protein bS16 family. (149 aa)
	rpmJ	Ribosomal protein L36; Identified by match to protein family HMM PF00444; match to protein family HMM TIGR01022; Belongs to the bacterial ribosomal protein bL36 family. (40 aa)

Your Current Organism:

Corynebacterium matruchotii

NCBI taxonomy Id: 553207
Other names: C. matruchotii ATCC 14266, Corynebacterium matruchotii ATCC 14266, Corynebacterium matruchotii str. ATCC 14266, Corynebacterium matruchotii strain ATCC 14266

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
rpmB	rpmE	HMPREF0299_5619	HMPREF0299_5618	Ribosomal protein L28; Identified by match to protein family HMM PF00830; match to protein family HMM TIGR00009; Belongs to the bacterial ribosomal protein bL28 family.	Ribosomal protein L31; Identified by match to protein family HMM PF01197; match to protein family HMM TIGR00105.	0.999
rpmB	rpmF	HMPREF0299_5619	HMPREF0299_5617	Ribosomal protein L28; Identified by match to protein family HMM PF00830; match to protein family HMM TIGR00009; Belongs to the bacterial ribosomal protein bL28 family.	Ribosomal protein L32; Identified by match to protein family HMM PF01783; match to protein family HMM TIGR01031; Belongs to the bacterial ribosomal protein bL32 family.	0.999
rpmB	rpmJ	HMPREF0299_5619	HMPREF0299_7155	Ribosomal protein L28; Identified by match to protein family HMM PF00830; match to protein family HMM TIGR00009; Belongs to the bacterial ribosomal protein bL28 family.	Ribosomal protein L36; Identified by match to protein family HMM PF00444; match to protein family HMM TIGR01022; Belongs to the bacterial ribosomal protein bL36 family.	0.999
rpmB	rpsP	HMPREF0299_5619	HMPREF0299_6732	Ribosomal protein L28; Identified by match to protein family HMM PF00830; match to protein family HMM TIGR00009; Belongs to the bacterial ribosomal protein bL28 family.	Ribosomal protein S16; Identified by match to protein family HMM PF00886; match to protein family HMM TIGR00002; Belongs to the bacterial ribosomal protein bS16 family.	0.999
rpmB	tuf	HMPREF0299_5619	HMPREF0299_5990	Ribosomal protein L28; Identified by match to protein family HMM PF00830; match to protein family HMM TIGR00009; Belongs to the bacterial ribosomal protein bL28 family.	Translation elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	0.997
rpmE	rpmB	HMPREF0299_5618	HMPREF0299_5619	Ribosomal protein L31; Identified by match to protein family HMM PF01197; match to protein family HMM TIGR00105.	Ribosomal protein L28; Identified by match to protein family HMM PF00830; match to protein family HMM TIGR00009; Belongs to the bacterial ribosomal protein bL28 family.	0.999
rpmE	rpmF	HMPREF0299_5618	HMPREF0299_5617	Ribosomal protein L31; Identified by match to protein family HMM PF01197; match to protein family HMM TIGR00105.	Ribosomal protein L32; Identified by match to protein family HMM PF01783; match to protein family HMM TIGR01031; Belongs to the bacterial ribosomal protein bL32 family.	0.999
rpmE	rpmJ	HMPREF0299_5618	HMPREF0299_7155	Ribosomal protein L31; Identified by match to protein family HMM PF01197; match to protein family HMM TIGR00105.	Ribosomal protein L36; Identified by match to protein family HMM PF00444; match to protein family HMM TIGR01022; Belongs to the bacterial ribosomal protein bL36 family.	0.998
rpmE	rpsP	HMPREF0299_5618	HMPREF0299_6732	Ribosomal protein L31; Identified by match to protein family HMM PF01197; match to protein family HMM TIGR00105.	Ribosomal protein S16; Identified by match to protein family HMM PF00886; match to protein family HMM TIGR00002; Belongs to the bacterial ribosomal protein bS16 family.	0.999
rpmE	tuf	HMPREF0299_5618	HMPREF0299_5990	Ribosomal protein L31; Identified by match to protein family HMM PF01197; match to protein family HMM TIGR00105.	Translation elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	0.997
rpmF	rpmB	HMPREF0299_5617	HMPREF0299_5619	Ribosomal protein L32; Identified by match to protein family HMM PF01783; match to protein family HMM TIGR01031; Belongs to the bacterial ribosomal protein bL32 family.	Ribosomal protein L28; Identified by match to protein family HMM PF00830; match to protein family HMM TIGR00009; Belongs to the bacterial ribosomal protein bL28 family.	0.999
rpmF	rpmE	HMPREF0299_5617	HMPREF0299_5618	Ribosomal protein L32; Identified by match to protein family HMM PF01783; match to protein family HMM TIGR01031; Belongs to the bacterial ribosomal protein bL32 family.	Ribosomal protein L31; Identified by match to protein family HMM PF01197; match to protein family HMM TIGR00105.	0.999
rpmF	rpmJ	HMPREF0299_5617	HMPREF0299_7155	Ribosomal protein L32; Identified by match to protein family HMM PF01783; match to protein family HMM TIGR01031; Belongs to the bacterial ribosomal protein bL32 family.	Ribosomal protein L36; Identified by match to protein family HMM PF00444; match to protein family HMM TIGR01022; Belongs to the bacterial ribosomal protein bL36 family.	0.999
rpmF	rpsP	HMPREF0299_5617	HMPREF0299_6732	Ribosomal protein L32; Identified by match to protein family HMM PF01783; match to protein family HMM TIGR01031; Belongs to the bacterial ribosomal protein bL32 family.	Ribosomal protein S16; Identified by match to protein family HMM PF00886; match to protein family HMM TIGR00002; Belongs to the bacterial ribosomal protein bS16 family.	0.999
rpmF	tuf	HMPREF0299_5617	HMPREF0299_5990	Ribosomal protein L32; Identified by match to protein family HMM PF01783; match to protein family HMM TIGR01031; Belongs to the bacterial ribosomal protein bL32 family.	Translation elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	0.999
rpmJ	rpmB	HMPREF0299_7155	HMPREF0299_5619	Ribosomal protein L36; Identified by match to protein family HMM PF00444; match to protein family HMM TIGR01022; Belongs to the bacterial ribosomal protein bL36 family.	Ribosomal protein L28; Identified by match to protein family HMM PF00830; match to protein family HMM TIGR00009; Belongs to the bacterial ribosomal protein bL28 family.	0.999
rpmJ	rpmE	HMPREF0299_7155	HMPREF0299_5618	Ribosomal protein L36; Identified by match to protein family HMM PF00444; match to protein family HMM TIGR01022; Belongs to the bacterial ribosomal protein bL36 family.	Ribosomal protein L31; Identified by match to protein family HMM PF01197; match to protein family HMM TIGR00105.	0.998
rpmJ	rpmF	HMPREF0299_7155	HMPREF0299_5617	Ribosomal protein L36; Identified by match to protein family HMM PF00444; match to protein family HMM TIGR01022; Belongs to the bacterial ribosomal protein bL36 family.	Ribosomal protein L32; Identified by match to protein family HMM PF01783; match to protein family HMM TIGR01031; Belongs to the bacterial ribosomal protein bL32 family.	0.999
rpmJ	rpsP	HMPREF0299_7155	HMPREF0299_6732	Ribosomal protein L36; Identified by match to protein family HMM PF00444; match to protein family HMM TIGR01022; Belongs to the bacterial ribosomal protein bL36 family.	Ribosomal protein S16; Identified by match to protein family HMM PF00886; match to protein family HMM TIGR00002; Belongs to the bacterial ribosomal protein bS16 family.	0.999
rpmJ	tuf	HMPREF0299_7155	HMPREF0299_5990	Ribosomal protein L36; Identified by match to protein family HMM PF00444; match to protein family HMM TIGR01022; Belongs to the bacterial ribosomal protein bL36 family.	Translation elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.	0.999

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