(12 nodes) Mixed, incl. Two-component regulatory system, and Peptidase S1C network (Corynebacterium matruchotii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	EFM47927.1	Hypothetical protein. (143 aa)
	EFM47877.1	ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518. (507 aa)
	EFM48174.1	Response regulator receiver domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486. (222 aa)
	EFM47789.1	PAS domain S-box protein. (690 aa)
	EFM48186.1	Hypothetical protein. (64 aa)
	EFM47733.1	Molybdopterin binding domain protein; Identified by match to protein family HMM PF00994. (227 aa)
	EFM47934.1	Trypsin; Identified by match to protein family HMM PF00089. (477 aa)
	EFM48079.1	ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518. (517 aa)
	mprA	Response regulator receiver domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486. (230 aa)
	mtrA	Response regulator receiver domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486. (228 aa)
	EFM49953.1	ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518. (562 aa)
	lpqB	Putative lipoprotein LpqB. (573 aa)

Your Current Organism:

Corynebacterium matruchotii

NCBI taxonomy Id: 553207
Other names: C. matruchotii ATCC 14266, Corynebacterium matruchotii ATCC 14266, Corynebacterium matruchotii str. ATCC 14266, Corynebacterium matruchotii strain ATCC 14266

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EFM47733.1	EFM47934.1	HMPREF0299_5613	HMPREF0299_5614	Molybdopterin binding domain protein; Identified by match to protein family HMM PF00994.	Trypsin; Identified by match to protein family HMM PF00089.	0.928
EFM47733.1	EFM48079.1	HMPREF0299_5613	HMPREF0299_5615	Molybdopterin binding domain protein; Identified by match to protein family HMM PF00994.	ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.	0.621
EFM47733.1	EFM48186.1	HMPREF0299_5613	HMPREF0299_5612	Molybdopterin binding domain protein; Identified by match to protein family HMM PF00994.	Hypothetical protein.	0.795
EFM47733.1	mprA	HMPREF0299_5613	HMPREF0299_5616	Molybdopterin binding domain protein; Identified by match to protein family HMM PF00994.	Response regulator receiver domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.	0.538
EFM47789.1	EFM48174.1	HMPREF0299_5574	HMPREF0299_5432	PAS domain S-box protein.	Response regulator receiver domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.	0.587
EFM47789.1	EFM49953.1	HMPREF0299_5574	HMPREF0299_6252	PAS domain S-box protein.	ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.	0.764
EFM47789.1	mprA	HMPREF0299_5574	HMPREF0299_5616	PAS domain S-box protein.	Response regulator receiver domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.	0.587
EFM47789.1	mtrA	HMPREF0299_5574	HMPREF0299_6251	PAS domain S-box protein.	Response regulator receiver domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.	0.587
EFM47877.1	EFM47927.1	HMPREF0299_5431	HMPREF0299_5430	ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.	Hypothetical protein.	0.773
EFM47877.1	EFM48174.1	HMPREF0299_5431	HMPREF0299_5432	ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.	Response regulator receiver domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.	0.982
EFM47877.1	EFM49953.1	HMPREF0299_5431	HMPREF0299_6252	ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.	ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.	0.538
EFM47877.1	mprA	HMPREF0299_5431	HMPREF0299_5616	ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.	Response regulator receiver domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.	0.900
EFM47877.1	mtrA	HMPREF0299_5431	HMPREF0299_6251	ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.	Response regulator receiver domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.	0.885
EFM47927.1	EFM47877.1	HMPREF0299_5430	HMPREF0299_5431	Hypothetical protein.	ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.	0.773
EFM47927.1	EFM48174.1	HMPREF0299_5430	HMPREF0299_5432	Hypothetical protein.	Response regulator receiver domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.	0.773
EFM47934.1	EFM47733.1	HMPREF0299_5614	HMPREF0299_5613	Trypsin; Identified by match to protein family HMM PF00089.	Molybdopterin binding domain protein; Identified by match to protein family HMM PF00994.	0.928
EFM47934.1	EFM48079.1	HMPREF0299_5614	HMPREF0299_5615	Trypsin; Identified by match to protein family HMM PF00089.	ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.	0.678
EFM47934.1	EFM48186.1	HMPREF0299_5614	HMPREF0299_5612	Trypsin; Identified by match to protein family HMM PF00089.	Hypothetical protein.	0.695
EFM47934.1	mprA	HMPREF0299_5614	HMPREF0299_5616	Trypsin; Identified by match to protein family HMM PF00089.	Response regulator receiver domain protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF00486.	0.682
EFM48079.1	EFM47733.1	HMPREF0299_5615	HMPREF0299_5613	ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; Identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.	Molybdopterin binding domain protein; Identified by match to protein family HMM PF00994.	0.621

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