(5 nodes) Mixed, incl. NADH-ubiquinone/plastoquinone oxidoreductase chain 4L, and NADH-ubiquinone/plastoquinone oxidoreductase chain 6, subunit NuoJ network (Streptomyces gilvosporeus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ARF54168.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (160 aa)
	ARF54169.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (100 aa)
	ARF54170.1	Sodium:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (243 aa)
	ARF54171.1	Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (115 aa)
	ARF54172.1	NADH-quinone oxidoreductase subunit D; Derived by automated computational analysis using gene prediction method: Protein Homology. (600 aa)

Your Current Organism:

Streptomyces gilvosporeus

NCBI taxonomy Id: 553510
Other names: S. gilvosporeus

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARF54168.1	ARF54169.1	B1H19_08125	B1H19_08130	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.945
ARF54168.1	ARF54170.1	B1H19_08125	B1H19_08135	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sodium:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.992
ARF54168.1	ARF54171.1	B1H19_08125	B1H19_08140	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997
ARF54168.1	ARF54172.1	B1H19_08125	B1H19_08145	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	NADH-quinone oxidoreductase subunit D; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.995
ARF54169.1	ARF54168.1	B1H19_08130	B1H19_08125	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.945
ARF54169.1	ARF54170.1	B1H19_08130	B1H19_08135	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sodium:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.955
ARF54169.1	ARF54171.1	B1H19_08130	B1H19_08140	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.962
ARF54169.1	ARF54172.1	B1H19_08130	B1H19_08145	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	NADH-quinone oxidoreductase subunit D; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.932
ARF54170.1	ARF54168.1	B1H19_08135	B1H19_08125	Sodium:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.992
ARF54170.1	ARF54169.1	B1H19_08135	B1H19_08130	Sodium:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.955
ARF54170.1	ARF54171.1	B1H19_08135	B1H19_08140	Sodium:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
ARF54170.1	ARF54172.1	B1H19_08135	B1H19_08145	Sodium:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	NADH-quinone oxidoreductase subunit D; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
ARF54171.1	ARF54168.1	B1H19_08140	B1H19_08125	Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997
ARF54171.1	ARF54169.1	B1H19_08140	B1H19_08130	Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.962
ARF54171.1	ARF54170.1	B1H19_08140	B1H19_08135	Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sodium:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
ARF54171.1	ARF54172.1	B1H19_08140	B1H19_08145	Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	NADH-quinone oxidoreductase subunit D; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
ARF54172.1	ARF54168.1	B1H19_08145	B1H19_08125	NADH-quinone oxidoreductase subunit D; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.995
ARF54172.1	ARF54169.1	B1H19_08145	B1H19_08130	NADH-quinone oxidoreductase subunit D; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.932
ARF54172.1	ARF54170.1	B1H19_08145	B1H19_08135	NADH-quinone oxidoreductase subunit D; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sodium:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
ARF54172.1	ARF54171.1	B1H19_08145	B1H19_08140	NADH-quinone oxidoreductase subunit D; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999