(5 nodes) Anaerobic electron transport chain, and Formate dehydrogenase complex network (Streptomyces gilvosporeus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ARF59813.1	Formate hydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (496 aa)
	ARF58056.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (233 aa)
	ARF58057.1	Formate hydrogenlyase; Derived by automated computational analysis using gene prediction method: Protein Homology. (317 aa)
	ARF58058.1	Hydrogenase 4 subunit B; Derived by automated computational analysis using gene prediction method: Protein Homology. (681 aa)
	ARF58059.1	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (160 aa)

Your Current Organism:

Streptomyces gilvosporeus

NCBI taxonomy Id: 553510
Other names: S. gilvosporeus

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARF58056.1	ARF58057.1	B1H19_31210	B1H19_31215	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Formate hydrogenlyase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.991
ARF58056.1	ARF58058.1	B1H19_31210	B1H19_31220	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hydrogenase 4 subunit B; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.982
ARF58056.1	ARF58059.1	B1H19_31210	B1H19_31225	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.990
ARF58056.1	ARF59813.1	B1H19_31210	B1H19_31200	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Formate hydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
ARF58057.1	ARF58056.1	B1H19_31215	B1H19_31210	Formate hydrogenlyase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.991
ARF58057.1	ARF58058.1	B1H19_31215	B1H19_31220	Formate hydrogenlyase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hydrogenase 4 subunit B; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.996
ARF58057.1	ARF58059.1	B1H19_31215	B1H19_31225	Formate hydrogenlyase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
ARF58057.1	ARF59813.1	B1H19_31215	B1H19_31200	Formate hydrogenlyase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Formate hydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
ARF58058.1	ARF58056.1	B1H19_31220	B1H19_31210	Hydrogenase 4 subunit B; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.982
ARF58058.1	ARF58057.1	B1H19_31220	B1H19_31215	Hydrogenase 4 subunit B; Derived by automated computational analysis using gene prediction method: Protein Homology.	Formate hydrogenlyase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.996
ARF58058.1	ARF58059.1	B1H19_31220	B1H19_31225	Hydrogenase 4 subunit B; Derived by automated computational analysis using gene prediction method: Protein Homology.	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997
ARF58058.1	ARF59813.1	B1H19_31220	B1H19_31200	Hydrogenase 4 subunit B; Derived by automated computational analysis using gene prediction method: Protein Homology.	Formate hydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
ARF58059.1	ARF58056.1	B1H19_31225	B1H19_31210	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.990
ARF58059.1	ARF58057.1	B1H19_31225	B1H19_31215	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Formate hydrogenlyase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
ARF58059.1	ARF58058.1	B1H19_31225	B1H19_31220	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hydrogenase 4 subunit B; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997
ARF58059.1	ARF59813.1	B1H19_31225	B1H19_31200	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Formate hydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
ARF59813.1	ARF58056.1	B1H19_31200	B1H19_31210	Formate hydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
ARF59813.1	ARF58057.1	B1H19_31200	B1H19_31215	Formate hydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Formate hydrogenlyase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
ARF59813.1	ARF58058.1	B1H19_31200	B1H19_31220	Formate hydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hydrogenase 4 subunit B; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
ARF59813.1	ARF58059.1	B1H19_31200	B1H19_31225	Formate hydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999