(8 nodes) Axon network (Streptomyces gilvosporeus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ARF54662.1	Pyridoxal-dependent decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (520 aa)
	ARF54287.1	Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (233 aa)
	ARF53228.1	Aspartate aminotransferase family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (476 aa)
	ARF58528.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (138 aa)
	ARF57266.1	Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (227 aa)
	ARF55560.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (323 aa)
	ARF55071.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (219 aa)
	ARF54830.1	Aspartate aminotransferase family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (468 aa)

Your Current Organism:

Streptomyces gilvosporeus

NCBI taxonomy Id: 553510
Other names: S. gilvosporeus

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same PNG format, but at higher resolution

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARF53228.1	ARF58528.1	B1H19_02740	B1H19_33935	Aspartate aminotransferase family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.414
ARF54662.1	ARF54830.1	B1H19_11000	B1H19_11960	Pyridoxal-dependent decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aspartate aminotransferase family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.920
ARF54830.1	ARF54662.1	B1H19_11960	B1H19_11000	Aspartate aminotransferase family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pyridoxal-dependent decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.920
ARF54830.1	ARF58528.1	B1H19_11960	B1H19_33935	Aspartate aminotransferase family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.683
ARF58528.1	ARF53228.1	B1H19_33935	B1H19_02740	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Aspartate aminotransferase family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.414
ARF58528.1	ARF54830.1	B1H19_33935	B1H19_11960	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Aspartate aminotransferase family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.683