(27 nodes) WD40/YVTN repeat-like-containing domain superfamily network (Streptomyces gilvosporeus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ARF53307.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (324 aa)
	ARF58848.1	Glycosyl hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (361 aa)
	ARF58842.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (355 aa)
	ARF58813.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (357 aa)
	B1H19_35435	Dehydrogenase; Incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (464 aa)
	ARF58395.1	Glycosyl hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (893 aa)
	ARF58245.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (587 aa)
	ARF57126.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (704 aa)
	ARF57125.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (731 aa)
	ARF56947.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (344 aa)
	ARF56785.1	Serine/threonine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (783 aa)
	ARF56601.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1337 aa)
	ARF55836.1	Serine/threonine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (858 aa)
	ARF55731.1	Peptidase S41; Degrades oligopeptides; Belongs to the peptidase S41B family. (1140 aa)
	ARF55009.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (771 aa)
	ARF59367.1	Molybdenum metabolism regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (480 aa)
	ARF54497.1	Aryl sulfotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (374 aa)
	ARF54428.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (400 aa)
	ARF53872.1	Surface layer protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (353 aa)
	ARF53557.1	Phosphoesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (918 aa)
	ARF59210.1	Serine/threonine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (751 aa)
	ARF53278.1	Gluconolaconase; Derived by automated computational analysis using gene prediction method: Protein Homology. (635 aa)
	ARF53113.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (710 aa)
	ARF53112.1	Serine/threonine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (747 aa)
	vgb	Virginiamycin B lyase; Inactivates the type B streptogramin antibiotics by linearizing the lactone ring at the ester linkage, generating a free phenylglycine carboxylate and converting the threonyl moiety into 2- amino-butenoic acid. (311 aa)
	ARF53036.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1347 aa)
	ARF52857.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (173 aa)

Your Current Organism:

Streptomyces gilvosporeus

NCBI taxonomy Id: 553510
Other names: S. gilvosporeus

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARF53036.1	ARF58245.1	B1H19_01510	B1H19_32315	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.525
ARF53112.1	ARF53113.1	B1H19_01990	B1H19_01995	Serine/threonine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.822
ARF53113.1	ARF53112.1	B1H19_01995	B1H19_01990	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Serine/threonine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.822
ARF53307.1	ARF58245.1	B1H19_03215	B1H19_32315	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.558
ARF53557.1	ARF58395.1	B1H19_04635	B1H19_33180	Phosphoesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyl hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.699
ARF53872.1	ARF54428.1	B1H19_06480	B1H19_09610	Surface layer protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.456
ARF54428.1	ARF53872.1	B1H19_09610	B1H19_06480	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Surface layer protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.456
ARF57125.1	ARF57126.1	B1H19_25795	B1H19_25800	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.745
ARF57126.1	ARF57125.1	B1H19_25800	B1H19_25795	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.745
ARF58245.1	ARF53036.1	B1H19_32315	B1H19_01510	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.525
ARF58245.1	ARF53307.1	B1H19_32315	B1H19_03215	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.558
ARF58395.1	ARF53557.1	B1H19_33180	B1H19_04635	Glycosyl hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphoesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.699