(10 nodes) Pseudouridine synthase, RluA-like, conserved site, and GTP binding domain network (Photobacterium leiognathi)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CTM89_02145	Unannotated protein. (228 aa)
	CTM89_05235	Unannotated protein; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (164 aa)
	rlmB	Unannotated protein; Specifically methylates the ribose of guanosine 2251 in 23S rRNA. (240 aa)
	CTM89_06295	Unannotated protein. (585 aa)
	engB	Unannotated protein; Necessary for normal cell division and for the maintenance of normal septation; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngB GTPase family. (221 aa)
	CTM89_13180	Unannotated protein; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. (235 aa)
	truD	Unannotated protein; Responsible for synthesis of pseudouridine from uracil-13 in transfer RNAs; Belongs to the pseudouridine synthase TruD family. (360 aa)
	rsfS	Unannotated protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation. (105 aa)
	CTM89_05070	Unannotated protein; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily. (316 aa)
	CTM89_03585	Unannotated protein; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. (314 aa)

Your Current Organism:

Photobacterium leiognathi

NCBI taxonomy Id: 553611
Other names: ATCC 25521, CAIM 327, CCUG 16229, CIP 66.5, LMG 4228, LMG:4228, P. leiognathi, Photobacterium sp. CMB_001

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CTM89_02145	CTM89_05070	GCA_001557755_00261	GCA_001557755_03210	Unannotated protein.	Unannotated protein; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily.	0.848
CTM89_02145	CTM89_05235	GCA_001557755_00261	GCA_001557755_01049	Unannotated protein.	Unannotated protein; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.661
CTM89_02145	engB	GCA_001557755_00261	GCA_001557755_01851	Unannotated protein.	Unannotated protein; Necessary for normal cell division and for the maintenance of normal septation; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngB GTPase family.	0.819
CTM89_02145	rlmB	GCA_001557755_00261	GCA_001557755_01154	Unannotated protein.	Unannotated protein; Specifically methylates the ribose of guanosine 2251 in 23S rRNA.	0.738
CTM89_02145	rsfS	GCA_001557755_00261	GCA_001557755_02322	Unannotated protein.	Unannotated protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation.	0.848
CTM89_02145	truD	GCA_001557755_00261	GCA_001557755_02021	Unannotated protein.	Unannotated protein; Responsible for synthesis of pseudouridine from uracil-13 in transfer RNAs; Belongs to the pseudouridine synthase TruD family.	0.829
CTM89_03585	CTM89_05070	GCA_001557755_03678	GCA_001557755_03210	Unannotated protein; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.	Unannotated protein; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily.	0.824
CTM89_03585	CTM89_05235	GCA_001557755_03678	GCA_001557755_01049	Unannotated protein; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.	Unannotated protein; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.661
CTM89_03585	engB	GCA_001557755_03678	GCA_001557755_01851	Unannotated protein; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.	Unannotated protein; Necessary for normal cell division and for the maintenance of normal septation; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngB GTPase family.	0.819
CTM89_03585	rlmB	GCA_001557755_03678	GCA_001557755_01154	Unannotated protein; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.	Unannotated protein; Specifically methylates the ribose of guanosine 2251 in 23S rRNA.	0.825
CTM89_03585	rsfS	GCA_001557755_03678	GCA_001557755_02322	Unannotated protein; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.	Unannotated protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation.	0.848
CTM89_03585	truD	GCA_001557755_03678	GCA_001557755_02021	Unannotated protein; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.	Unannotated protein; Responsible for synthesis of pseudouridine from uracil-13 in transfer RNAs; Belongs to the pseudouridine synthase TruD family.	0.829
CTM89_05070	CTM89_02145	GCA_001557755_03210	GCA_001557755_00261	Unannotated protein; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily.	Unannotated protein.	0.848
CTM89_05070	CTM89_03585	GCA_001557755_03210	GCA_001557755_03678	Unannotated protein; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily.	Unannotated protein; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.	0.824
CTM89_05070	CTM89_05235	GCA_001557755_03210	GCA_001557755_01049	Unannotated protein; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily.	Unannotated protein; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.	0.861
CTM89_05070	CTM89_06295	GCA_001557755_03210	GCA_001557755_01790	Unannotated protein; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily.	Unannotated protein.	0.824
CTM89_05070	CTM89_13180	GCA_001557755_03210	GCA_001557755_01894	Unannotated protein; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily.	Unannotated protein; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.	0.824
CTM89_05070	engB	GCA_001557755_03210	GCA_001557755_01851	Unannotated protein; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily.	Unannotated protein; Necessary for normal cell division and for the maintenance of normal septation; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngB GTPase family.	0.957
CTM89_05070	rlmB	GCA_001557755_03210	GCA_001557755_01154	Unannotated protein; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily.	Unannotated protein; Specifically methylates the ribose of guanosine 2251 in 23S rRNA.	0.934
CTM89_05070	rsfS	GCA_001557755_03210	GCA_001557755_02322	Unannotated protein; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily.	Unannotated protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation.	0.983