STRINGSTRING
CTM89_01290 CTM89_01290 CRG86_014540 CRG86_014540 CTM89_02965 CTM89_02965 CTM89_02960 CTM89_02960 CTM89_02770 CTM89_02770 CTM89_02625 CTM89_02625 CTM89_02570 CTM89_02570 CTM89_02285 CTM89_02285 CTM89_02125 CTM89_02125 CTM89_06885 CTM89_06885 CTM89_10965 CTM89_10965 CRG86_008395 CRG86_008395 aceK aceK CTM89_10915 CTM89_10915 CTM89_10910 CTM89_10910 CTM89_10670 CTM89_10670 CRG86_013715 CRG86_013715 CTM89_01035 CTM89_01035 CTM89_08545 CTM89_08545 CTM89_08540 CTM89_08540 CTM89_08535 CTM89_08535 rraA rraA CTM89_08455 CTM89_08455 CRG86_020175 CRG86_020175 CTM89_06520 CTM89_06520 CTM89_04435 CTM89_04435 CTM89_04440 CTM89_04440 CTM89_15920 CTM89_15920 CTM89_20445 CTM89_20445 GCA_001557755_01197 GCA_001557755_01197 GCA_001557755_01273 GCA_001557755_01273 ybaK ybaK CTM89_20270 CTM89_20270 CTM89_20265 CTM89_20265 CRG86_017145 CRG86_017145 CTM89_03090 CTM89_03090 CRG86_011355 CRG86_011355 CRG86_011360 CRG86_011360 CTM89_03025 CTM89_03025 CTM89_02990 CTM89_02990 CRG86_011525 CRG86_011525 GCA_001557755_01562 GCA_001557755_01562 CTM89_18065 CTM89_18065 CTM89_18070 CTM89_18070 CRG86_002010 CRG86_002010 CTM89_18080 CTM89_18080 lumQ lumQ CTM89_17905 CTM89_17905 CTM89_20795 CTM89_20795 CRG86_001140 CRG86_001140 CTM89_06285 CTM89_06285 GCA_001557755_01778 GCA_001557755_01778 GCA_001557755_01785 GCA_001557755_01785 CTM89_06315 CTM89_06315 CRG86_021910 CRG86_021910 CTM89_13120 CTM89_13120 CTM89_07780 CTM89_07780 CTM89_07775 CTM89_07775 CTM89_09000 CTM89_09000 CTM89_19695 CTM89_19695 CTM89_19670 CTM89_19670 CRG86_009235 CRG86_009235 CTM89_15345 CTM89_15345 CRG86_021060 CRG86_021060 CTM89_19340 CTM89_19340 csdE csdE csdA csdA CTM89_19275 CTM89_19275 CTM89_19270 CTM89_19270 CTM89_19265 CTM89_19265 rlmM rlmM CTM89_10405 CTM89_10405 CTM89_10400 CTM89_10400 CTM89_10395 CTM89_10395 CTM89_10385 CTM89_10385 GCA_001557755_02562 GCA_001557755_02562 CTM89_00695 CTM89_00695 CTM89_00690 CTM89_00690 CTM89_00685 CTM89_00685 CRG86_012695 CRG86_012695 CTM89_00670 CTM89_00670 CTM89_00665 CTM89_00665 CTM89_00660 CTM89_00660 GCA_001557755_02636 GCA_001557755_02636 CTM89_16370 CTM89_16370 GCA_001557755_03069 GCA_001557755_03069 CTM89_11915 CTM89_11915 CRG86_006440 CRG86_006440 CTM89_11925 CTM89_11925 CTM89_11930 CTM89_11930 CTM89_12195 CTM89_12195 CTM89_06240 CTM89_06240 CTM89_06235 CTM89_06235 CTM89_06225 CTM89_06225 CTM89_06210 CTM89_06210 CTM89_06175 CTM89_06175 CTM89_19090 CTM89_19090 CTM89_14695 CTM89_14695 CTM89_14550 CTM89_14550 CTM89_14530 CTM89_14530 CTM89_14270 CTM89_14270 CTM89_03230 CTM89_03230 CTM89_03235 CTM89_03235 CTM89_03475 CTM89_03475 CRG86_009800 CRG86_009800 CTM89_12805 CTM89_12805 CTM89_11290 CTM89_11290 CTM89_11835 CTM89_11835 GCA_001557755_04174 GCA_001557755_04174 CTM89_12295 CTM89_12295 CTM89_12145 CTM89_12145 GCA_001557755_04258 GCA_001557755_04258
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
CTM89_01290Unannotated protein. (233 aa)
CRG86_014540Unannotated protein; Belongs to the LysR transcriptional regulatory family. (300 aa)
CTM89_02965Unannotated protein. (101 aa)
CTM89_02960Unannotated protein. (133 aa)
CTM89_02770Unannotated protein; Belongs to the LysR transcriptional regulatory family. (302 aa)
CTM89_02625Unannotated protein; Belongs to the LysR transcriptional regulatory family. (316 aa)
CTM89_02570Unannotated protein. (293 aa)
CTM89_02285Unannotated protein; Belongs to the LysR transcriptional regulatory family. (324 aa)
CTM89_02125Unannotated protein; Belongs to the LysR transcriptional regulatory family. (294 aa)
CTM89_06885Unannotated protein; Belongs to the LysR transcriptional regulatory family. (293 aa)
CTM89_10965Unannotated protein; Belongs to the UPF0246 family. (257 aa)
CRG86_008395Unannotated protein. (60 aa)
aceKUnannotated protein; Bifunctional enzyme which can phosphorylate or dephosphorylate isocitrate dehydrogenase (IDH) on a specific serine residue. This is a regulatory mechanism which enables bacteria to bypass the Krebs cycle via the glyoxylate shunt in response to the source of carbon. When bacteria are grown on glucose, IDH is fully active and unphosphorylated, but when grown on acetate or ethanol, the activity of IDH declines drastically concomitant with its phosphorylation. (576 aa)
CTM89_10915Unannotated protein. (157 aa)
CTM89_10910Unannotated protein; Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions. (165 aa)
CTM89_10670Unannotated protein. (286 aa)
CRG86_013715Unannotated protein. (85 aa)
CTM89_01035Unannotated protein; Belongs to the LysR transcriptional regulatory family. (303 aa)
CTM89_08545Unannotated protein. (112 aa)
CTM89_08540Unannotated protein. (247 aa)
CTM89_08535Unannotated protein. (206 aa)
rraAUnannotated protein; Globally modulates RNA abundance by binding to RNase E (Rne) and regulating its endonucleolytic activity. Can modulate Rne action in a substrate-dependent manner by altering the composition of the degradosome. Modulates RNA-binding and helicase activities of the degradosome. (161 aa)
CTM89_08455Unannotated protein. (188 aa)
CRG86_020175Unannotated protein; Belongs to the LysR transcriptional regulatory family. (303 aa)
CTM89_06520Unannotated protein. (311 aa)
CTM89_04435Unannotated protein. (283 aa)
CTM89_04440Unannotated protein. (140 aa)
CTM89_15920Unannotated protein. (325 aa)
CTM89_20445Unannotated protein. (267 aa)
GCA_001557755_01197Unannotated protein. (207 aa)
GCA_001557755_01273Unannotated protein. (280 aa)
ybaKUnannotated protein; Belongs to the prolyl-tRNA editing family. YbaK/EbsC subfamily. (159 aa)
CTM89_20270Unannotated protein; Belongs to the LysR transcriptional regulatory family. (304 aa)
CTM89_20265Unannotated protein. (204 aa)
CRG86_017145Unannotated protein; Belongs to the LysR transcriptional regulatory family. (296 aa)
CTM89_03090Unannotated protein. (274 aa)
CRG86_011355Unannotated protein; Belongs to the LysR transcriptional regulatory family. (294 aa)
CRG86_011360Unannotated protein. (228 aa)
CTM89_03025Unannotated protein; Belongs to the LysR transcriptional regulatory family. (291 aa)
CTM89_02990Unannotated protein; Belongs to the LysR transcriptional regulatory family. (303 aa)
CRG86_011525Unannotated protein; Belongs to the LysR transcriptional regulatory family. (304 aa)
GCA_001557755_01562Unannotated protein. (57 aa)
CTM89_18065Unannotated protein. (187 aa)
CTM89_18070Unannotated protein. (154 aa)
CRG86_002010Unannotated protein. (81 aa)
CTM89_18080Unannotated protein. (459 aa)
lumQUnannotated protein; Probable transcriptional regulator. Its target gene(s) is not yet known. (248 aa)
CTM89_17905Unannotated protein. (353 aa)
CTM89_20795Unannotated protein; Belongs to the LysR transcriptional regulatory family. (286 aa)
CRG86_001140Unannotated protein; Belongs to the LysR transcriptional regulatory family. (312 aa)
CTM89_06285Unannotated protein; Belongs to the LysR transcriptional regulatory family. (303 aa)
GCA_001557755_01778Unannotated protein. (308 aa)
GCA_001557755_01785Unannotated protein. (230 aa)
CTM89_06315Unannotated protein; Belongs to the LysR transcriptional regulatory family. (292 aa)
CRG86_021910Unannotated protein. (241 aa)
CTM89_13120Unannotated protein; Belongs to the LysR transcriptional regulatory family. (318 aa)
CTM89_07780Unannotated protein. (376 aa)
CTM89_07775Unannotated protein; Belongs to the LysR transcriptional regulatory family. (318 aa)
CTM89_09000Unannotated protein; Belongs to the LysR transcriptional regulatory family. (285 aa)
CTM89_19695Unannotated protein. (203 aa)
CTM89_19670Unannotated protein; Belongs to the LysR transcriptional regulatory family. (316 aa)
CRG86_009235Unannotated protein; Belongs to the LysR transcriptional regulatory family. (298 aa)
CTM89_15345Unannotated protein; Belongs to the LysR transcriptional regulatory family. (314 aa)
CRG86_021060Unannotated protein. (59 aa)
CTM89_19340Unannotated protein; Belongs to the LysR transcriptional regulatory family. (295 aa)
csdEUnannotated protein. (144 aa)
csdAUnannotated protein; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. (406 aa)
CTM89_19275Unannotated protein; Belongs to the LysR transcriptional regulatory family. (306 aa)
CTM89_19270Unannotated protein. (225 aa)
CTM89_19265Unannotated protein. (130 aa)
rlmMUnannotated protein; Catalyzes the 2'-O-methylation at nucleotide C2498 in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. RlmM subfamily. (361 aa)
CTM89_10405Unannotated protein. (76 aa)
CTM89_10400Unannotated protein. (425 aa)
CTM89_10395Unannotated protein; Belongs to the LysR transcriptional regulatory family. (300 aa)
CTM89_10385Unannotated protein. (369 aa)
GCA_001557755_02562Unannotated protein. (345 aa)
CTM89_00695Unannotated protein. (174 aa)
CTM89_00690Unannotated protein. (191 aa)
CTM89_00685Unannotated protein. (180 aa)
CRG86_012695Unannotated protein. (89 aa)
CTM89_00670Unannotated protein. (451 aa)
CTM89_00665Unannotated protein. (262 aa)
CTM89_00660Unannotated protein. (256 aa)
GCA_001557755_02636Unannotated protein. (523 aa)
CTM89_16370Unannotated protein; Belongs to the LysR transcriptional regulatory family. (310 aa)
GCA_001557755_03069Unannotated protein. (304 aa)
CTM89_11915Unannotated protein. (781 aa)
CRG86_006440Unannotated protein. (172 aa)
CTM89_11925Unannotated protein; Belongs to the LysR transcriptional regulatory family. (300 aa)
CTM89_11930Unannotated protein. (175 aa)
CTM89_12195Unannotated protein; Belongs to the LysR transcriptional regulatory family. (312 aa)
CTM89_06240Unannotated protein. (382 aa)
CTM89_06235Unannotated protein. (455 aa)
CTM89_06225Unannotated protein. (97 aa)
CTM89_06210Unannotated protein; Belongs to the LysR transcriptional regulatory family. (301 aa)
CTM89_06175Unannotated protein; Belongs to the LysR transcriptional regulatory family. (292 aa)
CTM89_19090Unannotated protein. (335 aa)
CTM89_14695Unannotated protein; Belongs to the LysR transcriptional regulatory family. (297 aa)
CTM89_14550Unannotated protein; Belongs to the LysR transcriptional regulatory family. (301 aa)
CTM89_14530Unannotated protein. (171 aa)
CTM89_14270Unannotated protein; Belongs to the LysR transcriptional regulatory family. (290 aa)
CTM89_03230Unannotated protein. (359 aa)
CTM89_03235Unannotated protein. (379 aa)
CTM89_03475Unannotated protein; Belongs to the LysR transcriptional regulatory family. (306 aa)
CRG86_009800Unannotated protein; Belongs to the LysR transcriptional regulatory family. (294 aa)
CTM89_12805Unannotated protein. (288 aa)
CTM89_11290Unannotated protein. (216 aa)
CTM89_11835Unannotated protein; Belongs to the LysR transcriptional regulatory family. (287 aa)
GCA_001557755_04174Unannotated protein. (291 aa)
CTM89_12295Unannotated protein; Belongs to the LysR transcriptional regulatory family. (303 aa)
CTM89_12145Unannotated protein; Belongs to the LysR transcriptional regulatory family. (292 aa)
GCA_001557755_04258Unannotated protein. (292 aa)
Your Current Organism:
Photobacterium leiognathi
NCBI taxonomy Id: 553611
Other names: ATCC 25521, CAIM 327, CCUG 16229, CIP 66.5, LMG 4228, LMG:4228, P. leiognathi, Photobacterium sp. CMB_001
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.