STRINGSTRING
rpoA rpoA selA selA rsmC rsmC trmB trmB CTM89_07655 CTM89_07655 cysS cysS rsmA rsmA CTM89_20225 CTM89_20225 rlmF rlmF CTM89_20960 CTM89_20960 deaD deaD rnb rnb CTM89_05965 CTM89_05965 CTM89_03585 CTM89_03585 rne rne metG metG serS serS CTM89_03755 CTM89_03755 rnt rnt selU selU dusC dusC CTM89_12605 CTM89_12605 truA truA mnmC mnmC CTM89_12820 CTM89_12820 rnd rnd argS argS glnS glnS fliA fliA CTM89_15905 CTM89_15905 gltX gltX CTM89_01220 CTM89_01220 rumB rumB pheT pheT pheS pheS thrS thrS asnS asnS cmoM cmoM CTM89_02275 CTM89_02275 CTM89_02245 CTM89_02245 CTM89_02230 CTM89_02230 CTM89_02155 CTM89_02155 CTM89_02145 CTM89_02145 aspS aspS gluQ gluQ rsmH rsmH rsmI rsmI CRG86_019425 CRG86_019425 truB truB rlmE rlmE ileS ileS lysS lysS CTM89_10975 CTM89_10975 srmB srmB tyrS tyrS CTM89_18540 CTM89_18540 CTM89_00965 CTM89_00965 CTM89_01095 CTM89_01095 trmH trmH rpoZ rpoZ CTM89_08760 CTM89_08760 rph rph trmL trmL trpS trpS CRG86_004175 CRG86_004175 rpoB rpoB rpoC rpoC CRG86_022170 CRG86_022170 dusB dusB epmA epmA orn orn miaA miaA rnr rnr rlmB rlmB dusA dusA GCA_001557755_01224 GCA_001557755_01224 pth pth hemA hemA ybaK ybaK CTM89_10085 CTM89_10085 thiI thiI rlmG rlmG CTM89_03075 CTM89_03075 CTM89_03040 CTM89_03040 CTM89_13660 CTM89_13660 trpS-2 trpS-2 CTM89_20080 CTM89_20080 CRG86_001540 CRG86_001540 CTM89_06295 CTM89_06295 rsmJ rsmJ dtd dtd trmA trmA CTM89_13180 CTM89_13180 dnaG dnaG cca cca valS valS GCA_001557755_01971 GCA_001557755_01971 trmD trmD alaS alaS truD truD rlmD rlmD rnc rnc CTM89_07785 CTM89_07785 rsmD rsmD CTM89_09045 CTM89_09045 rhlB rhlB rlmJ rlmJ hisS hisS rlmN rlmN trmJ trmJ tgt tgt queA queA glyQ glyQ glyS glyS rnpA rnpA rsmG rsmG CTM89_15630 CTM89_15630 fmt fmt ybeY ybeY leuS leuS rlmH rlmH rnhA rnhA CTM89_19290 CTM89_19290 CTM89_19610 CTM89_19610 tsaA tsaA proS proS rnhB rnhB rhlE rhlE CTM89_10625 CTM89_10625 rlmI rlmI CRG86_012605 CRG86_012605 CTM89_18690 CTM89_18690 CTM89_18720 CTM89_18720 CTM89_00130 CTM89_00130 rsmF rsmF rlmL rlmL
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
rpoAUnannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (329 aa)
selAUnannotated protein; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis. (487 aa)
rsmCUnannotated protein; Specifically methylates the guanine in position 1207 of 16S rRNA in the 30S particle; Belongs to the methyltransferase superfamily. RsmC family. (340 aa)
trmBUnannotated protein; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. (245 aa)
CTM89_07655Unannotated protein; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. (225 aa)
cysSUnannotated protein; Belongs to the class-I aminoacyl-tRNA synthetase family. (460 aa)
rsmAUnannotated protein; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. (274 aa)
CTM89_20225Unannotated protein; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. (324 aa)
rlmFUnannotated protein; Specifically methylates the adenine in position 1618 of 23S rRNA. (333 aa)
CTM89_20960Unannotated protein; Belongs to the DEAD box helicase family. (446 aa)
deaDUnannotated protein; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation. (627 aa)
rnbUnannotated protein; Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction. (674 aa)
CTM89_05965Unannotated protein; Belongs to the sigma-70 factor family. (242 aa)
CTM89_03585Unannotated protein; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. (314 aa)
rneUnannotated protein; Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs. Belongs to the RNase E/G family. RNase E subfamily. (1105 aa)
metGUnannotated protein; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation. (681 aa)
serSUnannotated protein; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec). (435 aa)
CTM89_03755Unannotated protein; Belongs to the pseudouridine synthase RsuA family. (216 aa)
rntUnannotated protein; Trims short 3' overhangs of a variety of RNA species, leaving a one or two nucleotide 3' overhang. Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A). Also appears to be involved in tRNA biosynthesis. (218 aa)
selUUnannotated protein; Involved in the post-transcriptional modification of the uridine at the wobble position (U34) of tRNA(Lys), tRNA(Glu) and tRNA(Gln). Catalyzes the conversion of 2-thiouridine (S2U-RNA) to 2- selenouridine (Se2U-RNA). Acts in a two-step process involving geranylation of 2-thiouridine (S2U) to S-geranyl-2-thiouridine (geS2U) and subsequent selenation of the latter derivative to 2-selenouridine (Se2U) in the tRNA chain. (362 aa)
dusCUnannotated protein; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines. Specifically modifies U16 in tRNAs. Belongs to the Dus family. DusC subfamily. (313 aa)
CTM89_12605Unannotated protein. (205 aa)
truAUnannotated protein; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs. (261 aa)
mnmCUnannotated protein; Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34; In the C-terminal section; belongs to the DAO family. (687 aa)
CTM89_12820Unannotated protein; Belongs to the pseudouridine synthase RsuA family. (351 aa)
rndUnannotated protein; Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides; Belongs to the RNase D family. (350 aa)
argSUnannotated protein. (576 aa)
glnSUnannotated protein. (554 aa)
fliAUnannotated protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor controls the expression of flagella-related genes; Belongs to the sigma-70 factor family. FliA subfamily. (240 aa)
CTM89_15905Unannotated protein; Belongs to the DEAD box helicase family. (432 aa)
gltXUnannotated protein; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily. (474 aa)
CTM89_01220Unannotated protein; Belongs to the RNase T2 family. (337 aa)
rumBUnannotated protein; Catalyzes the formation of 5-methyl-uridine at position 747 (m5U747) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmC subfamily. (380 aa)
pheTUnannotated protein; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily. (795 aa)
pheSUnannotated protein; Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily. (327 aa)
thrSUnannotated protein; Catalyzes the attachment of threonine to tRNA(Thr) in a two- step reaction: L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr). (643 aa)
asnSUnannotated protein. (466 aa)
cmoMUnannotated protein; Catalyzes the methylation of 5-carboxymethoxyuridine (cmo5U) to form 5-methoxycarbonylmethoxyuridine (mcmo5U) at position 34 in tRNAs; Belongs to the class I-like SAM-binding methyltransferase superfamily. CmoM family. (277 aa)
CTM89_02275Unannotated protein. (263 aa)
CTM89_02245Unannotated protein; Belongs to the pseudouridine synthase RsuA family. (379 aa)
CTM89_02230Unannotated protein. (296 aa)
CTM89_02155Unannotated protein; Belongs to the methyltransferase superfamily. (312 aa)
CTM89_02145Unannotated protein. (228 aa)
aspSUnannotated protein; Catalyzes the attachment of L-aspartate to tRNA(Asp) in a two-step reaction: L-aspartate is first activated by ATP to form Asp- AMP and then transferred to the acceptor end of tRNA(Asp). Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily. (596 aa)
gluQUnannotated protein; Catalyzes the tRNA-independent activation of glutamate in presence of ATP and the subsequent transfer of glutamate onto a tRNA(Asp). Glutamate is transferred on the 2-amino-5-(4,5-dihydroxy-2- cyclopenten-1-yl) moiety of the queuosine in the wobble position of the QUC anticodon; Belongs to the class-I aminoacyl-tRNA synthetase family. GluQ subfamily. (294 aa)
rsmHUnannotated protein; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA. (315 aa)
rsmIUnannotated protein; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA. (286 aa)
CRG86_019425Unannotated protein. (489 aa)
truBUnannotated protein; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily. (316 aa)
rlmEUnannotated protein; Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit. (209 aa)
ileSUnannotated protein; Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile). Belongs to the class-I aminoacyl-tRNA synthetase family. IleS type 1 subfamily. (946 aa)
lysSUnannotated protein; Belongs to the class-II aminoacyl-tRNA synthetase family. (502 aa)
CTM89_10975Unannotated protein; Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC). (236 aa)
srmBUnannotated protein; DEAD-box RNA helicase involved in the assembly of the 50S ribosomal subunit at low temperature. Exhibits RNA-stimulated ATP hydrolysis and RNA unwinding activity; Belongs to the DEAD box helicase family. SrmB subfamily. (411 aa)
tyrSUnannotated protein; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 2 subfamily. (395 aa)
CTM89_18540Unannotated protein. (1319 aa)
CTM89_00965Unannotated protein. (157 aa)
CTM89_01095Unannotated protein; Belongs to the DEAD box helicase family. (455 aa)
trmHUnannotated protein; Catalyzes the 2'-O methylation of guanosine at position 18 in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. (241 aa)
rpoZUnannotated protein; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. (91 aa)
CTM89_08760Unannotated protein. (287 aa)
rphUnannotated protein; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. (238 aa)
trmLUnannotated protein; Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S-adenosyl-L-methionine to the 2'-OH of the wobble nucleotide. (154 aa)
trpSUnannotated protein; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family. (340 aa)
CRG86_004175Unannotated protein. (198 aa)
rpoBUnannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1341 aa)
rpoCUnannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1405 aa)
CRG86_022170Unannotated protein. (256 aa)
dusBUnannotated protein; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the Dus family. DusB subfamily. (321 aa)
epmAUnannotated protein; With EpmB is involved in the beta-lysylation step of the post-translational modification of translation elongation factor P (EF- P). Catalyzes the ATP-dependent activation of (R)-beta-lysine produced by EpmB, forming a lysyl-adenylate, from which the beta-lysyl moiety is then transferred to the epsilon-amino group of a conserved specific lysine residue in EF-P; Belongs to the class-II aminoacyl-tRNA synthetase family. EpmA subfamily. (322 aa)
ornUnannotated protein; 3'-to-5' exoribonuclease specific for small oligoribonucleotides; Belongs to the oligoribonuclease family. (181 aa)
miaAUnannotated protein; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. (311 aa)
rnrUnannotated protein; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. (855 aa)
rlmBUnannotated protein; Specifically methylates the ribose of guanosine 2251 in 23S rRNA. (240 aa)
dusAUnannotated protein; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines. Specifically modifies U20 and U20a in tRNAs; Belongs to the Dus family. DusA subfamily. (346 aa)
GCA_001557755_01224Unannotated protein. (367 aa)
pthUnannotated protein; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family. (196 aa)
hemAUnannotated protein; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA). (420 aa)
ybaKUnannotated protein; Belongs to the prolyl-tRNA editing family. YbaK/EbsC subfamily. (159 aa)
CTM89_10085Unannotated protein. (291 aa)
thiIUnannotated protein; Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS. (483 aa)
rlmGUnannotated protein; Specifically methylates the guanine in position 1835 (m2G1835) of 23S rRNA. (374 aa)
CTM89_03075Unannotated protein. (159 aa)
CTM89_03040Unannotated protein; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. (255 aa)
CTM89_13660Unannotated protein. (155 aa)
trpS-2Unannotated protein; Belongs to the class-I aminoacyl-tRNA synthetase family. (338 aa)
CTM89_20080Unannotated protein; Belongs to the DEAD box helicase family. (461 aa)
CRG86_001540Unannotated protein. (110 aa)
CTM89_06295Unannotated protein. (585 aa)
rsmJUnannotated protein; Specifically methylates the guanosine in position 1516 of 16S rRNA. (257 aa)
dtdUnannotated protein; An aminoacyl-tRNA editing enzyme that deacylates mischarged D-aminoacyl-tRNAs. Also deacylates mischarged glycyl-tRNA(Ala), protecting cells against glycine mischarging by AlaRS. Acts via tRNA- based rather than protein-based catalysis; rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D- aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl- tRNA entities in vivo and helps enforce protein L-homochirality. Belongs to the DTD family. (145 aa)
trmAUnannotated protein; Dual-specificity methyltransferase that catalyzes the formation of 5-methyluridine at position 54 (m5U54) in all tRNAs, and that of position 341 (m5U341) in tmRNA (transfer-mRNA). (368 aa)
CTM89_13180Unannotated protein; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. (235 aa)
dnaGUnannotated protein; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. (586 aa)
ccaUnannotated protein; Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate. Also shows phosphatase, 2'-nucleotidase and 2',3'-cyclic phosphodiesterase activities. These phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases. (411 aa)
valSUnannotated protein; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily. (953 aa)
GCA_001557755_01971Unannotated protein. (481 aa)
trmDUnannotated protein; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family. (248 aa)
alaSUnannotated protein; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. (874 aa)
truDUnannotated protein; Responsible for synthesis of pseudouridine from uracil-13 in transfer RNAs; Belongs to the pseudouridine synthase TruD family. (360 aa)
rlmDUnannotated protein; Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily. (439 aa)
rncUnannotated protein; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. (224 aa)
CTM89_07785Unannotated protein. (160 aa)
rsmDUnannotated protein; Specifically methylates the guanine in position 966 of 16S rRNA in the assembled 30S particle; Belongs to the methyltransferase superfamily. RsmD family. (201 aa)
CTM89_09045Unannotated protein. (194 aa)
rhlBUnannotated protein; DEAD-box RNA helicase involved in RNA degradation. Has RNA- dependent ATPase activity and unwinds double-stranded RNA. Belongs to the DEAD box helicase family. RhlB subfamily. (436 aa)
rlmJUnannotated protein; Specifically methylates the adenine in position 2030 of 23S rRNA. (279 aa)
hisSUnannotated protein. (422 aa)
rlmNUnannotated protein; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs. m2A2503 modification seems to play a crucial role in the proofreading step occurring at the peptidyl transferase center and thus would serve to optimize ribosomal fidelity; Belongs to the radical SAM superfamily. RlmN family. (373 aa)
trmJUnannotated protein; Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA. (246 aa)
tgtUnannotated protein; Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, - Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the product. [...] (374 aa)
queAUnannotated protein; Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA). (350 aa)
glyQUnannotated protein. (303 aa)
glySUnannotated protein. (689 aa)
rnpAUnannotated protein; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. (107 aa)
rsmGUnannotated protein; Specifically methylates the N7 position of guanine in position 527 of 16S rRNA. (206 aa)
CTM89_15630Unannotated protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. (426 aa)
fmtUnannotated protein; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. (314 aa)
ybeYUnannotated protein; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. (154 aa)
leuSUnannotated protein; Belongs to the class-I aminoacyl-tRNA synthetase family. (857 aa)
rlmHUnannotated protein; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA; Belongs to the RNA methyltransferase RlmH family. (156 aa)
rnhAUnannotated protein; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. (154 aa)
CTM89_19290Unannotated protein. (269 aa)
CTM89_19610Unannotated protein. (245 aa)
tsaAUnannotated protein. (233 aa)
proSUnannotated protein; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacyl [...] (571 aa)
rnhBUnannotated protein; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. (203 aa)
rhlEUnannotated protein; DEAD-box RNA helicase involved in ribosome assembly. Has RNA- dependent ATPase activity and unwinds double-stranded RNA. (494 aa)
CTM89_10625Unannotated protein. (170 aa)
rlmIUnannotated protein; Specifically methylates the cytosine at position 1962 (m5C1962) of 23S rRNA. (396 aa)
CRG86_012605Unannotated protein; Belongs to the pseudouridine synthase RsuA family. (231 aa)
CTM89_18690Unannotated protein. (239 aa)
CTM89_18720Unannotated protein; Belongs to the DEAD box helicase family. (427 aa)
CTM89_00130Unannotated protein. (473 aa)
rsmFUnannotated protein; Specifically methylates the cytosine at position 1407 (m5C1407) of 16S rRNA. (476 aa)
rlmLUnannotated protein; Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA. Belongs to the methyltransferase superfamily. RlmKL family. (712 aa)
Your Current Organism:
Photobacterium leiognathi
NCBI taxonomy Id: 553611
Other names: ATCC 25521, CAIM 327, CCUG 16229, CIP 66.5, LMG 4228, LMG:4228, P. leiognathi, Photobacterium sp. CMB_001
Server load: low (20%) [HD]