(24 nodes) RNA polymerase II general transcription initiation factor activity network (Platysternon megacephalum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DR999_PMT04095	FYVE, RhoGEF and PH domain-containing protein 5. (373 aa)
	DR999_PMT01139	Acyl-coenzyme A thioesterase 5-like. (952 aa)
	DR999_PMT01559	Beta-1,3-galactosyltransferase 2-like. (422 aa)
	DR999_PMT03516	Tapasin-related protein-like. (93 aa)
	DR999_PMT02542	Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 3. (307 aa)
	DR999_PMT07947	Outer dense fiber protein 2. (186 aa)
	DR999_PMT12309	Trophoblast glycoprotein-like. (401 aa)
	DR999_PMT11724	Armadillo repeat-containing protein 7. (150 aa)
	DR999_PMT11935	Mitochondrial import inner membrane translocase subunit Tim8 A. (315 aa)
	DR999_PMT13119	Biliverdin reductase A. (360 aa)
	DR999_PMT12994	Anoctamin-4. (120 aa)
	DR999_PMT08589	Opsin-5-like. (1588 aa)
	DR999_PMT10118	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family. (109 aa)
	DR999_PMT10078	Histone deacetylase complex subunit SAP130. (301 aa)
	DR999_PMT13329	Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase. (291 aa)
	DR999_PMT11688	Spermatogenesis-associated protein 20. (278 aa)
	DR999_PMT11712	Polycystin-1-like. (316 aa)
	DR999_PMT15295	Cytochrome c oxidase subunit 6A1, mitochondrial. (176 aa)
	DR999_PMT13417	General transcription factor IIE subunit 1. (439 aa)
	DR999_PMT16382	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (516 aa)
	DR999_PMT20298	Mitogen-activated protein kinase 3. (98 aa)
	DR999_PMT20564	Serine/threonine-protein kinase LMTK3. (628 aa)
	DR999_PMT21317	Transcription initiation factor TFIID subunit 6. (674 aa)
	DR999_PMT21366	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (460 aa)

Your Current Organism:

Platysternon megacephalum

NCBI taxonomy Id: 55544
Other names: P. megacephalum, Platysternon macrocephalus, big-headed turtle

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DR999_PMT01139	DR999_PMT01559	A0A4D9FD92	A0A4D9F614	Acyl-coenzyme A thioesterase 5-like.	Beta-1,3-galactosyltransferase 2-like.	0.884
DR999_PMT01139	DR999_PMT02542	A0A4D9FD92	A0A4D9ERS7	Acyl-coenzyme A thioesterase 5-like.	Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 3.	0.927
DR999_PMT01139	DR999_PMT04095	A0A4D9FD92	A0A4D9EQ84	Acyl-coenzyme A thioesterase 5-like.	FYVE, RhoGEF and PH domain-containing protein 5.	0.896
DR999_PMT01139	DR999_PMT07947	A0A4D9FD92	A0A4D9EFC1	Acyl-coenzyme A thioesterase 5-like.	Outer dense fiber protein 2.	0.973
DR999_PMT01139	DR999_PMT10078	A0A4D9FD92	A0A4D9E9G8	Acyl-coenzyme A thioesterase 5-like.	Histone deacetylase complex subunit SAP130.	0.986
DR999_PMT01139	DR999_PMT10118	A0A4D9FD92	A0A4D9EAG6	Acyl-coenzyme A thioesterase 5-like.	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family.	0.976
DR999_PMT01139	DR999_PMT11688	A0A4D9FD92	A0A4D9E5T2	Acyl-coenzyme A thioesterase 5-like.	Spermatogenesis-associated protein 20.	0.975
DR999_PMT01139	DR999_PMT11712	A0A4D9FD92	A0A4D9E449	Acyl-coenzyme A thioesterase 5-like.	Polycystin-1-like.	0.975
DR999_PMT01139	DR999_PMT11935	A0A4D9FD92	A0A4D9ED63	Acyl-coenzyme A thioesterase 5-like.	Mitochondrial import inner membrane translocase subunit Tim8 A.	0.986
DR999_PMT01139	DR999_PMT12994	A0A4D9FD92	A0A4D9EAX6	Acyl-coenzyme A thioesterase 5-like.	Anoctamin-4.	0.947
DR999_PMT01139	DR999_PMT13119	A0A4D9FD92	A0A4D9ECW4	Acyl-coenzyme A thioesterase 5-like.	Biliverdin reductase A.	0.999
DR999_PMT01139	DR999_PMT13329	A0A4D9FD92	A0A4D9E8K7	Acyl-coenzyme A thioesterase 5-like.	Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase.	0.939
DR999_PMT01139	DR999_PMT13417	A0A4D9FD92	A0A4D9E1R8	Acyl-coenzyme A thioesterase 5-like.	General transcription factor IIE subunit 1.	0.902
DR999_PMT01139	DR999_PMT15295	A0A4D9FD92	A0A4D9E2E6	Acyl-coenzyme A thioesterase 5-like.	Cytochrome c oxidase subunit 6A1, mitochondrial.	0.947
DR999_PMT01139	DR999_PMT16382	A0A4D9FD92	A0A4D9DUA0	Acyl-coenzyme A thioesterase 5-like.	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	0.947
DR999_PMT01139	DR999_PMT20298	A0A4D9FD92	A0A4D9DKQ3	Acyl-coenzyme A thioesterase 5-like.	Mitogen-activated protein kinase 3.	0.999
DR999_PMT01139	DR999_PMT20564	A0A4D9FD92	A0A4D9DJA4	Acyl-coenzyme A thioesterase 5-like.	Serine/threonine-protein kinase LMTK3.	0.990
DR999_PMT01139	DR999_PMT21317	A0A4D9FD92	A0A4D9DHW0	Acyl-coenzyme A thioesterase 5-like.	Transcription initiation factor TFIID subunit 6.	0.999
DR999_PMT01139	DR999_PMT21366	A0A4D9FD92	A0A4D9DH62	Acyl-coenzyme A thioesterase 5-like.	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	0.910
DR999_PMT01559	DR999_PMT01139	A0A4D9F614	A0A4D9FD92	Beta-1,3-galactosyltransferase 2-like.	Acyl-coenzyme A thioesterase 5-like.	0.884