(9 nodes) Signal transduction involved in regulation of gene expression network (Platysternon megacephalum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DR999_PMT14778	Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (258 aa)
	DR999_PMT00403	Nesprin-3. (244 aa)
	DR999_PMT05282	Paired box protein Pax-6. (422 aa)
	DR999_PMT02116	Retinol dehydrogenase 14. (468 aa)
	DR999_PMT00939	UAP56-interacting factor-like. (110 aa)
	DR999_PMT21749	ATPase AAA. (126 aa)
	DR999_PMT11372	5'-nucleotidase domain-containing protein 2. (300 aa)
	DR999_PMT10231	Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (235 aa)
	DR999_PMT18694	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family. (557 aa)

Your Current Organism:

Platysternon megacephalum

NCBI taxonomy Id: 55544
Other names: P. megacephalum, Platysternon macrocephalus, big-headed turtle

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structured XML interaction data, according to the 'PSI-MI' data standard

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DR999_PMT02116	DR999_PMT18694	A0A4D9F9V6	A0A4D9DX44	Retinol dehydrogenase 14.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.759
DR999_PMT10231	DR999_PMT11372	A0A4D9E964	A0A4D9EI55	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	5'-nucleotidase domain-containing protein 2.	0.480
DR999_PMT10231	DR999_PMT14778	A0A4D9E964	A0A4D9E331	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.728
DR999_PMT11372	DR999_PMT10231	A0A4D9EI55	A0A4D9E964	5'-nucleotidase domain-containing protein 2.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.480
DR999_PMT14778	DR999_PMT10231	A0A4D9E331	A0A4D9E964	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.728
DR999_PMT18694	DR999_PMT02116	A0A4D9DX44	A0A4D9F9V6	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	Retinol dehydrogenase 14.	0.759