(30 nodes) Transcription preinitiation complex assembly network (Platysternon megacephalum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DR999_PMT10118	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family. (109 aa)
	DR999_PMT01139	Acyl-coenzyme A thioesterase 5-like. (952 aa)
	DR999_PMT20564	Serine/threonine-protein kinase LMTK3. (628 aa)
	DR999_PMT20298	Mitogen-activated protein kinase 3. (98 aa)
	DR999_PMT22679	Haloacid dehalogenase. (122 aa)
	DR999_PMT13784	Potassium-transporting ATPase alpha chain 2. (236 aa)
	DR999_PMT12406	Protein phosphatase 1 regulatory subunit 7. (1101 aa)
	DR999_PMT00395	Stress-associated endoplasmic reticulum protein 2. (681 aa)
	DR999_PMT01682	Putative sodium-coupled neutral amino acid transporter 11. (52 aa)
	DR999_PMT11712	Polycystin-1-like. (316 aa)
	DR999_PMT11586	Endoplasmin. (616 aa)
	DR999_PMT02533	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1; Belongs to the SNF5 family. (386 aa)
	DR999_PMT04193	Galectin-12. (1200 aa)
	DR999_PMT01706	Acetylcholine receptor subunit alpha. (610 aa)
	DR999_PMT06264	Protein Dok-7. (695 aa)
	DR999_PMT03430	Transcription initiation factor TFIID subunit 12. (212 aa)
	DR999_PMT02340	Acetyl-CoA carboxylase 2. (575 aa)
	DR999_PMT07566	Protein transport protein Sec23B. (924 aa)
	DR999_PMT08831	Protein pelota-like protein. (415 aa)
	DR999_PMT11724	Armadillo repeat-containing protein 7. (150 aa)
	DR999_PMT13119	Biliverdin reductase A. (360 aa)
	DR999_PMT09025	Somatostatin receptor type 3. (414 aa)
	DR999_PMT12600	Transcription initiation factor TFIID subunit 13. (124 aa)
	DR999_PMT13765	Transcription initiation factor TFIID subunit 8. (303 aa)
	DR999_PMT11688	Spermatogenesis-associated protein 20. (278 aa)
	DR999_PMT21854	Riboflavin transporter 2-like. (287 aa)
	DR999_PMT21317	Transcription initiation factor TFIID subunit 6. (674 aa)
	DR999_PMT22006	Amidophosphoribosyltransferase. (900 aa)
	DR999_PMT00597	V-type proton ATPase subunit S1-like protein. (2437 aa)
	DR999_PMT01783	Transcription initiation factor TFIID subunit 4. (460 aa)

Your Current Organism:

Platysternon megacephalum

NCBI taxonomy Id: 55544
Other names: P. megacephalum, Platysternon macrocephalus, big-headed turtle

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DR999_PMT00395	DR999_PMT00597	A0A4D9F357	A0A4D9F5T7	Stress-associated endoplasmic reticulum protein 2.	V-type proton ATPase subunit S1-like protein.	0.999
DR999_PMT00395	DR999_PMT11586	A0A4D9F357	A0A4D9E5R3	Stress-associated endoplasmic reticulum protein 2.	Endoplasmin.	0.433
DR999_PMT00395	DR999_PMT11688	A0A4D9F357	A0A4D9E5T2	Stress-associated endoplasmic reticulum protein 2.	Spermatogenesis-associated protein 20.	0.435
DR999_PMT00395	DR999_PMT11712	A0A4D9F357	A0A4D9E449	Stress-associated endoplasmic reticulum protein 2.	Polycystin-1-like.	0.435
DR999_PMT00597	DR999_PMT00395	A0A4D9F5T7	A0A4D9F357	V-type proton ATPase subunit S1-like protein.	Stress-associated endoplasmic reticulum protein 2.	0.999
DR999_PMT00597	DR999_PMT01139	A0A4D9F5T7	A0A4D9FD92	V-type proton ATPase subunit S1-like protein.	Acyl-coenzyme A thioesterase 5-like.	0.495
DR999_PMT00597	DR999_PMT08831	A0A4D9F5T7	A0A4D9EHB1	V-type proton ATPase subunit S1-like protein.	Protein pelota-like protein.	0.991
DR999_PMT00597	DR999_PMT11688	A0A4D9F5T7	A0A4D9E5T2	V-type proton ATPase subunit S1-like protein.	Spermatogenesis-associated protein 20.	0.403
DR999_PMT00597	DR999_PMT11712	A0A4D9F5T7	A0A4D9E449	V-type proton ATPase subunit S1-like protein.	Polycystin-1-like.	0.403
DR999_PMT01139	DR999_PMT00597	A0A4D9FD92	A0A4D9F5T7	Acyl-coenzyme A thioesterase 5-like.	V-type proton ATPase subunit S1-like protein.	0.495
DR999_PMT01139	DR999_PMT01682	A0A4D9FD92	A0A4D9F237	Acyl-coenzyme A thioesterase 5-like.	Putative sodium-coupled neutral amino acid transporter 11.	0.974
DR999_PMT01139	DR999_PMT01706	A0A4D9FD92	A0A4D9EVU3	Acyl-coenzyme A thioesterase 5-like.	Acetylcholine receptor subunit alpha.	0.974
DR999_PMT01139	DR999_PMT01783	A0A4D9FD92	A0A4D9FA43	Acyl-coenzyme A thioesterase 5-like.	Transcription initiation factor TFIID subunit 4.	0.974
DR999_PMT01139	DR999_PMT03430	A0A4D9FD92	A0A4D9ESR4	Acyl-coenzyme A thioesterase 5-like.	Transcription initiation factor TFIID subunit 12.	0.999
DR999_PMT01139	DR999_PMT04193	A0A4D9FD92	A0A4D9EZ33	Acyl-coenzyme A thioesterase 5-like.	Galectin-12.	0.999
DR999_PMT01139	DR999_PMT06264	A0A4D9FD92	A0A4D9EUF3	Acyl-coenzyme A thioesterase 5-like.	Protein Dok-7.	0.640
DR999_PMT01139	DR999_PMT07566	A0A4D9FD92	A0A4D9EQH7	Acyl-coenzyme A thioesterase 5-like.	Protein transport protein Sec23B.	0.999
DR999_PMT01139	DR999_PMT10118	A0A4D9FD92	A0A4D9EAG6	Acyl-coenzyme A thioesterase 5-like.	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family.	0.976
DR999_PMT01139	DR999_PMT11688	A0A4D9FD92	A0A4D9E5T2	Acyl-coenzyme A thioesterase 5-like.	Spermatogenesis-associated protein 20.	0.975
DR999_PMT01139	DR999_PMT11712	A0A4D9FD92	A0A4D9E449	Acyl-coenzyme A thioesterase 5-like.	Polycystin-1-like.	0.975