36 items (Platysternon megacephalum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DR999_PMT10379	Interferon alpha/beta receptor 2. (498 aa)
	DR999_PMT06743	Tyrosine-protein kinase. (1028 aa)
	DR999_PMT11525	Chromodomain-helicase-DNA-binding protein 1-like. (209 aa)
	DR999_PMT09389	Tyrosine-protein phosphatase non-receptor type. (466 aa)
	DR999_PMT10423	Tether containing UBX domain for GLUT4. (567 aa)
	DR999_PMT16302	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily. (611 aa)
	DR999_PMT13279	Interferon-induced very large GTPase 1-like. (460 aa)
	DR999_PMT12589	Tetraspan membrane protein of hair cell stereocilia. (111 aa)
	DR999_PMT23329	2-hydroxyhepta-2,4-diene-1,7-dioate isomerase. (179 aa)
	DR999_PMT05839	Mitotic spindle assembly checkpoint protein MAD1. (374 aa)
	DR999_PMT15678	Estradiol 17 beta-dehydrogenase 5-like. (728 aa)
	DR999_PMT00464	Echinoderm microtubule-associated protein-like 1. (350 aa)
	DR999_PMT00011	cGMP-specific 3',5'-cyclic phosphodiesterase. (599 aa)
	DR999_PMT02648	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily. (594 aa)
	DR999_PMT20903	Interferon regulatory factor 8. (257 aa)
	DR999_PMT02426	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily. (594 aa)
	DR999_PMT03719	XIAP-associated factor 1. (306 aa)
	DR999_PMT15687	Interleukin-17 receptor A. (728 aa)
	DR999_PMT15456	Protein tyrosine phosphatase domain-containing protein 1. (518 aa)
	DR999_PMT02319	Radical S-adenosyl methionine domain-containing protein 2. (356 aa)
	DR999_PMT03898	Zinc fingers and homeoboxes protein 1. (462 aa)
	DR999_PMT07891	Putative G-protein coupled receptor 144. (802 aa)
	DR999_PMT08181	Transmembrane protein 246. (427 aa)
	DR999_PMT06164	Cyclin-dependent kinase 4 inhibitor C. (392 aa)
	DR999_PMT21332	Tyrosine-protein kinase. (1179 aa)
	DR999_PMT20638	Neuropathy target esterase-like. (1008 aa)
	DR999_PMT21003	Chemokine-like receptor 1. (138 aa)
	DR999_PMT22319	Acyl-CoA synthetase. (208 aa)
	DR999_PMT20820	Rab GDP dissociation inhibitor beta. (381 aa)
	DR999_PMT18451	Kin of IRRE-like protein 2. (207 aa)
	DR999_PMT16329	Importin subunit alpha; Belongs to the importin alpha family. (538 aa)
	DR999_PMT17154	Ubl carboxyl-terminal hydrolase 18; Belongs to the peptidase C19 family. (373 aa)
	DR999_PMT06060	RalBP1-associated Eps domain-containing protein 2. (877 aa)
	DR999_PMT00826	Iron-sulfur cluster assembly 1-like protein, mitochondrial. (384 aa)
	DR999_PMT03177	Very long-chain acyl-CoA synthetase. (134 aa)
	DR999_PMT00914	Protein Wnt-11b. (188 aa)

Your Current Organism:

Platysternon megacephalum

NCBI taxonomy Id: 55544
Other names: P. megacephalum, Platysternon macrocephalus, big-headed turtle

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DR999_PMT00011	DR999_PMT03719	A0A4D9EZS8	A0A4D9F407	cGMP-specific 3',5'-cyclic phosphodiesterase.	XIAP-associated factor 1.	0.481
DR999_PMT00011	DR999_PMT06164	A0A4D9EZS8	A0A4D9ENW2	cGMP-specific 3',5'-cyclic phosphodiesterase.	Cyclin-dependent kinase 4 inhibitor C.	0.623
DR999_PMT00011	DR999_PMT06743	A0A4D9EZS8	A0A4D9EHX2	cGMP-specific 3',5'-cyclic phosphodiesterase.	Tyrosine-protein kinase.	0.412
DR999_PMT00011	DR999_PMT15678	A0A4D9EZS8	A0A4D9DYC1	cGMP-specific 3',5'-cyclic phosphodiesterase.	Estradiol 17 beta-dehydrogenase 5-like.	0.990
DR999_PMT00011	DR999_PMT15687	A0A4D9EZS8	A0A4D9DVP2	cGMP-specific 3',5'-cyclic phosphodiesterase.	Interleukin-17 receptor A.	0.990
DR999_PMT00011	DR999_PMT21332	A0A4D9EZS8	A0A4D9DKB4	cGMP-specific 3',5'-cyclic phosphodiesterase.	Tyrosine-protein kinase.	0.412
DR999_PMT00464	DR999_PMT05839	A0A4D9EZG8	A0A4D9EZ22	Echinoderm microtubule-associated protein-like 1.	Mitotic spindle assembly checkpoint protein MAD1.	0.863
DR999_PMT00464	DR999_PMT15678	A0A4D9EZG8	A0A4D9DYC1	Echinoderm microtubule-associated protein-like 1.	Estradiol 17 beta-dehydrogenase 5-like.	0.502
DR999_PMT00464	DR999_PMT15687	A0A4D9EZG8	A0A4D9DVP2	Echinoderm microtubule-associated protein-like 1.	Interleukin-17 receptor A.	0.502
DR999_PMT00826	DR999_PMT06743	A0A4D9EY15	A0A4D9EHX2	Iron-sulfur cluster assembly 1-like protein, mitochondrial.	Tyrosine-protein kinase.	0.729
DR999_PMT00826	DR999_PMT10379	A0A4D9EY15	A0A4D9EKN6	Iron-sulfur cluster assembly 1-like protein, mitochondrial.	Interferon alpha/beta receptor 2.	0.929
DR999_PMT00826	DR999_PMT10423	A0A4D9EY15	A0A4D9E8P1	Iron-sulfur cluster assembly 1-like protein, mitochondrial.	Tether containing UBX domain for GLUT4.	0.896
DR999_PMT00826	DR999_PMT15678	A0A4D9EY15	A0A4D9DYC1	Iron-sulfur cluster assembly 1-like protein, mitochondrial.	Estradiol 17 beta-dehydrogenase 5-like.	0.786
DR999_PMT00826	DR999_PMT15687	A0A4D9EY15	A0A4D9DVP2	Iron-sulfur cluster assembly 1-like protein, mitochondrial.	Interleukin-17 receptor A.	0.786
DR999_PMT00826	DR999_PMT18451	A0A4D9EY15	A0A4D9DPH3	Iron-sulfur cluster assembly 1-like protein, mitochondrial.	Kin of IRRE-like protein 2.	0.640
DR999_PMT00826	DR999_PMT20903	A0A4D9EY15	A0A4D9DQS5	Iron-sulfur cluster assembly 1-like protein, mitochondrial.	Interferon regulatory factor 8.	0.491
DR999_PMT00826	DR999_PMT21003	A0A4D9EY15	A0A4D9DLA0	Iron-sulfur cluster assembly 1-like protein, mitochondrial.	Chemokine-like receptor 1.	0.491
DR999_PMT00826	DR999_PMT21332	A0A4D9EY15	A0A4D9DKB4	Iron-sulfur cluster assembly 1-like protein, mitochondrial.	Tyrosine-protein kinase.	0.729
DR999_PMT00914	DR999_PMT06743	A0A4D9EY45	A0A4D9EHX2	Protein Wnt-11b.	Tyrosine-protein kinase.	0.729
DR999_PMT00914	DR999_PMT10379	A0A4D9EY45	A0A4D9EKN6	Protein Wnt-11b.	Interferon alpha/beta receptor 2.	0.929