(50 nodes) RNA polymerase network (Platysternon megacephalum)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DR999_PMT12178	Purine-rich element-binding protein gamma. (305 aa)
	DR999_PMT09025	Somatostatin receptor type 3. (414 aa)
	DR999_PMT08933	Polypeptide N-acetylgalactosaminyltransferase 15. (401 aa)
	DR999_PMT08871	N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase; Belongs to the argonaute family. (966 aa)
	DR999_PMT13593	Protein FAM78A. (148 aa)
	DR999_PMT12310	Protein Wnt-11. (359 aa)
	DR999_PMT09709	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (108 aa)
	DR999_PMT14213	Cytosolic carboxypeptidase 3. (1035 aa)
	DR999_PMT14273	Mismatch repair endonuclease PMS2. (2090 aa)
	DR999_PMT10719	tRNA (Guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4. (613 aa)
	DR999_PMT11021	P2Y purinoceptor 12. (147 aa)
	DR999_PMT19416	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (103 aa)
	DR999_PMT17612	E3 ubiquitin-protein ligase NEURL3. (275 aa)
	DR999_PMT10794	Cathelicidin-2-like. (210 aa)
	DR999_PMT16941	C-C motif chemokine 13-like. (65 aa)
	DR999_PMT15604	F-box/WD repeat-containing protein 5. (747 aa)
	DR999_PMT16291	DNA-directed RNA polymerase II subunit RPB2; Belongs to the RNA polymerase beta chain family. (940 aa)
	DR999_PMT12680	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1132 aa)
	DR999_PMT12418	Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating. (422 aa)
	DR999_PMT15159	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1099 aa)
	DR999_PMT22388	DNA-directed RNA polymerase II subunit RPB1. (386 aa)
	DR999_PMT21193	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (121 aa)
	DR999_PMT22679	Haloacid dehalogenase. (122 aa)
	DR999_PMT20577	Butyrophilin subfamily 1 member A1-like. (172 aa)
	DR999_PMT21736	DNA-directed RNA polymerases I, II, and III subunit RPABC5. (67 aa)
	DR999_PMT18877	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (150 aa)
	DR999_PMT18416	Protein angel-like protein 2. (595 aa)
	DR999_PMT17914	Putative sodium-coupled neutral amino acid transporter 6. (276 aa)
	DR999_PMT16635	Dedicator of cytokinesis protein 2. (67 aa)
	DR999_PMT03698	Transcriptional adapter. (443 aa)
	DR999_PMT03133	SPOC domain-containing protein 1. (1696 aa)
	DR999_PMT00593	DNA-directed RNA polymerase III subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs. (219 aa)
	DR999_PMT05878	RBR-type E3 ubiquitin transferase. (473 aa)
	DR999_PMT01737	Coiled-coil domain-containing protein 141. (461 aa)
	DR999_PMT03744	DNA-directed RNA polymerase II subunit RPB11-a. (117 aa)
	DR999_PMT05375	Copine-3. (482 aa)
	DR999_PMT03312	Transcription elongation factor A protein 3. (575 aa)
	DR999_PMT06705	39S ribosomal protein L22. (208 aa)
	DR999_PMT04164	Delta(14)-sterol reductase. (675 aa)
	DR999_PMT08319	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family. (314 aa)
	DR999_PMT06616	Sorting nexin-13. (362 aa)
	DR999_PMT07714	DNA-directed RNA polymerases I and III subunit RPAC1. (260 aa)
	DR999_PMT10483	Endonuclease V. (276 aa)
	DR999_PMT09901	DNA-directed RNA polymerase III subunit RPC8. (206 aa)
	DR999_PMT07280	Cerebellin-1. (320 aa)
	DR999_PMT09907	Kelch-like protein 26. (127 aa)
	DR999_PMT06907	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1596 aa)
	DR999_PMT10497	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (534 aa)
	DR999_PMT09788	Nuclear receptor subfamily 2 group F member 6. (81 aa)
	DR999_PMT06935	Transcriptional adapter. (420 aa)

Your Current Organism:

Platysternon megacephalum

NCBI taxonomy Id: 55544
Other names: P. megacephalum, Platysternon macrocephalus, big-headed turtle

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DR999_PMT00593	DR999_PMT03312	A0A4D9EYK0	A0A4D9ERD2	DNA-directed RNA polymerase III subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs.	Transcription elongation factor A protein 3.	0.808
DR999_PMT00593	DR999_PMT05375	A0A4D9EYK0	A0A4D9ESZ0	DNA-directed RNA polymerase III subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs.	Copine-3.	0.808
DR999_PMT00593	DR999_PMT06616	A0A4D9EYK0	A0A4D9EMK1	DNA-directed RNA polymerase III subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs.	Sorting nexin-13.	0.808
DR999_PMT00593	DR999_PMT06705	A0A4D9EYK0	A0A4D9EPN1	DNA-directed RNA polymerase III subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs.	39S ribosomal protein L22.	0.808
DR999_PMT00593	DR999_PMT06907	A0A4D9EYK0	A0A4D9EHL1	DNA-directed RNA polymerase III subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.985
DR999_PMT00593	DR999_PMT07280	A0A4D9EYK0	A0A4D9EHU7	DNA-directed RNA polymerase III subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs.	Cerebellin-1.	0.508
DR999_PMT00593	DR999_PMT07714	A0A4D9EYK0	A0A4D9EJT8	DNA-directed RNA polymerase III subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs.	DNA-directed RNA polymerases I and III subunit RPAC1.	0.991
DR999_PMT00593	DR999_PMT08319	A0A4D9EYK0	A0A4D9EMM4	DNA-directed RNA polymerase III subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs.	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family.	0.996
DR999_PMT00593	DR999_PMT08933	A0A4D9EYK0	A0A4D9EAI8	DNA-directed RNA polymerase III subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs.	Polypeptide N-acetylgalactosaminyltransferase 15.	0.992
DR999_PMT00593	DR999_PMT09709	A0A4D9EYK0	A0A4D9E8H8	DNA-directed RNA polymerase III subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.990
DR999_PMT00593	DR999_PMT09901	A0A4D9EYK0	A0A4D9EJ35	DNA-directed RNA polymerase III subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs.	DNA-directed RNA polymerase III subunit RPC8.	0.988
DR999_PMT00593	DR999_PMT09907	A0A4D9EYK0	A0A4D9EHM1	DNA-directed RNA polymerase III subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs.	Kelch-like protein 26.	0.989
DR999_PMT00593	DR999_PMT10483	A0A4D9EYK0	A0A4D9EJZ0	DNA-directed RNA polymerase III subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs.	Endonuclease V.	0.753
DR999_PMT00593	DR999_PMT10497	A0A4D9EYK0	A0A4D9EGU4	DNA-directed RNA polymerase III subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs.	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.993
DR999_PMT00593	DR999_PMT10719	A0A4D9EYK0	A0A4D9E7U9	DNA-directed RNA polymerase III subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs.	tRNA (Guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4.	0.808
DR999_PMT00593	DR999_PMT10794	A0A4D9EYK0	A0A4D9E6G6	DNA-directed RNA polymerase III subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs.	Cathelicidin-2-like.	0.988
DR999_PMT00593	DR999_PMT11021	A0A4D9EYK0	A0A4D9E7J2	DNA-directed RNA polymerase III subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs.	P2Y purinoceptor 12.	0.547
DR999_PMT00593	DR999_PMT12178	A0A4D9EYK0	A0A4D9EEZ2	DNA-directed RNA polymerase III subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs.	Purine-rich element-binding protein gamma.	0.808
DR999_PMT00593	DR999_PMT12680	A0A4D9EYK0	A0A4D9E348	DNA-directed RNA polymerase III subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.993
DR999_PMT00593	DR999_PMT13593	A0A4D9EYK0	A0A4D9E9I8	DNA-directed RNA polymerase III subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs.	Protein FAM78A.	0.991