(66 nodes) Basal transcription factors network (Platysternon megacephalum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DR999_PMT03726	Forkhead box protein G1. (968 aa)
	DR999_PMT04169	Stonin-2; Belongs to the Stoned B family. (798 aa)
	DR999_PMT08579	Docking protein 5. (589 aa)
	DR999_PMT10169	Ankyrin repeat domain-containing protein 1. (681 aa)
	DR999_PMT04364	Enhancer of polycomb-like protein 1. (861 aa)
	DR999_PMT05267	Inhibitor of growth protein. (417 aa)
	DR999_PMT08385	Cytosolic 5'-nucleotidase 3A. (522 aa)
	DR999_PMT17911	Eukaryotic translation initiation factor 4 gamma 3. (735 aa)
	DR999_PMT16382	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (516 aa)
	DR999_PMT16808	Coronin-1B. (102 aa)
	DR999_PMT15453	F-box/WD repeat-containing protein 12. (608 aa)
	DR999_PMT15826	Kinesin-like protein KIF20A. (258 aa)
	DR999_PMT13784	Potassium-transporting ATPase alpha chain 2. (236 aa)
	DR999_PMT16919	Mitochondrial import inner membrane translocase subunit Tim22. (437 aa)
	DR999_PMT13417	General transcription factor IIE subunit 1. (439 aa)
	DR999_PMT15055	Multiple coagulation factor deficiency protein 2. (213 aa)
	DR999_PMT15295	Cytochrome c oxidase subunit 6A1, mitochondrial. (176 aa)
	DR999_PMT13608	Mediator of RNA polymerase II transcription subunit 27. (300 aa)
	DR999_PMT12406	Protein phosphatase 1 regulatory subunit 7. (1101 aa)
	DR999_PMT11712	Polycystin-1-like. (316 aa)
	DR999_PMT15815	Clathrin light chain B. (304 aa)
	DR999_PMT15533	Acidic leucine-rich nuclear phosphoprotein 32 family member B-like. (224 aa)
	DR999_PMT11688	Spermatogenesis-associated protein 20. (278 aa)
	DR999_PMT13765	Transcription initiation factor TFIID subunit 8. (303 aa)
	DR999_PMT13592	RNA exonuclease 4. (592 aa)
	DR999_PMT10093	Delta and Notch-like epidermal growth factor-related receptor. (292 aa)
	DR999_PMT13329	Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase. (291 aa)
	DR999_PMT10078	Histone deacetylase complex subunit SAP130. (301 aa)
	DR999_PMT13953	Bis(5'-nucleosyl)-tetraphosphatase. (778 aa)
	DR999_PMT10118	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family. (109 aa)
	DR999_PMT12600	Transcription initiation factor TFIID subunit 13. (124 aa)
	DR999_PMT12388	Sorbin and SH3 domain-containing protein 1. (538 aa)
	DR999_PMT12994	Anoctamin-4. (120 aa)
	DR999_PMT13119	Biliverdin reductase A. (360 aa)
	DR999_PMT11935	Mitochondrial import inner membrane translocase subunit Tim8 A. (315 aa)
	DR999_PMT12913	CREB-binding protein. (492 aa)
	DR999_PMT10137	StAR-related lipid transfer protein 13. (1876 aa)
	DR999_PMT09947	AP-1 complex subunit mu-1 isoform 2. (753 aa)
	DR999_PMT07947	Outer dense fiber protein 2. (186 aa)
	DR999_PMT11946	Gamma-aminobutyric acid receptor subunit beta-4-like. (223 aa)
	DR999_PMT00302	Inhibitor of growth protein. (288 aa)
	DR999_PMT01139	Acyl-coenzyme A thioesterase 5-like. (952 aa)
	DR999_PMT00563	Splicing regulatory glutamine/lysine-rich protein 1; Belongs to the protein kinase superfamily. (383 aa)
	DR999_PMT01783	Transcription initiation factor TFIID subunit 4. (460 aa)
	DR999_PMT00269	General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity. (262 aa)
	DR999_PMT01559	Beta-1,3-galactosyltransferase 2-like. (422 aa)
	DR999_PMT00522	General transcription factor IIH subunit. (395 aa)
	DR999_PMT01682	Putative sodium-coupled neutral amino acid transporter 11. (52 aa)
	DR999_PMT03372	Heat shock protein beta-1. (1344 aa)
	DR999_PMT01074	Putative P2Y purinoceptor 10-like. (254 aa)
	DR999_PMT03700	General transcription factor II-I. (1032 aa)
	DR999_PMT04193	Galectin-12. (1200 aa)
	DR999_PMT00595	Cyclin-H; Belongs to the cyclin family. (328 aa)
	DR999_PMT01706	Acetylcholine receptor subunit alpha. (610 aa)
	DR999_PMT01664	Bromodomain adjacent to zinc finger domain protein 2B. (559 aa)
	DR999_PMT03430	Transcription initiation factor TFIID subunit 12. (212 aa)
	DR999_PMT02542	Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 3. (307 aa)
	DR999_PMT07566	Protein transport protein Sec23B. (924 aa)
	DR999_PMT03800	Paired box protein Pax-9. (520 aa)
	DR999_PMT04095	FYVE, RhoGEF and PH domain-containing protein 5. (373 aa)
	DR999_PMT07657	Inhibitor of growth protein. (281 aa)
	DR999_PMT21366	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (460 aa)
	DR999_PMT21317	Transcription initiation factor TFIID subunit 6. (674 aa)
	DR999_PMT20564	Serine/threonine-protein kinase LMTK3. (628 aa)
	DR999_PMT20298	Mitogen-activated protein kinase 3. (98 aa)
	DR999_PMT19523	CDK-activating kinase assembly factor MAT1; Stabilizes the cyclin H-CDK7 complex to form a functional CDK-activating kinase (CAK) enzymatic complex. (309 aa)

Your Current Organism:

Platysternon megacephalum

NCBI taxonomy Id: 55544
Other names: P. megacephalum, Platysternon macrocephalus, big-headed turtle

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DR999_PMT00269	DR999_PMT00302	A0A4D9F931	A0A4D9FDL2	General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity.	Inhibitor of growth protein.	0.496
DR999_PMT00269	DR999_PMT00522	A0A4D9F931	A0A4D9F5L6	General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity.	General transcription factor IIH subunit.	0.987
DR999_PMT00269	DR999_PMT00563	A0A4D9F931	A0A4D9FCX9	General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity.	Splicing regulatory glutamine/lysine-rich protein 1; Belongs to the protein kinase superfamily.	0.947
DR999_PMT00269	DR999_PMT00595	A0A4D9F931	A0A4D9EWC6	General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity.	Cyclin-H; Belongs to the cyclin family.	0.967
DR999_PMT00269	DR999_PMT01074	A0A4D9F931	A0A4D9F150	General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity.	Putative P2Y purinoceptor 10-like.	0.930
DR999_PMT00269	DR999_PMT01139	A0A4D9F931	A0A4D9FD92	General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity.	Acyl-coenzyme A thioesterase 5-like.	0.934
DR999_PMT00269	DR999_PMT01559	A0A4D9F931	A0A4D9F614	General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity.	Beta-1,3-galactosyltransferase 2-like.	0.984
DR999_PMT00269	DR999_PMT01682	A0A4D9F931	A0A4D9F237	General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity.	Putative sodium-coupled neutral amino acid transporter 11.	0.905
DR999_PMT00269	DR999_PMT01706	A0A4D9F931	A0A4D9EVU3	General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity.	Acetylcholine receptor subunit alpha.	0.905
DR999_PMT00269	DR999_PMT01783	A0A4D9F931	A0A4D9FA43	General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity.	Transcription initiation factor TFIID subunit 4.	0.905
DR999_PMT00269	DR999_PMT02542	A0A4D9F931	A0A4D9ERS7	General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity.	Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 3.	0.987
DR999_PMT00269	DR999_PMT03430	A0A4D9F931	A0A4D9ESR4	General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity.	Transcription initiation factor TFIID subunit 12.	0.959
DR999_PMT00269	DR999_PMT03800	A0A4D9F931	A0A4D9EQ85	General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity.	Paired box protein Pax-9.	0.674
DR999_PMT00269	DR999_PMT04095	A0A4D9F931	A0A4D9EQ84	General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity.	FYVE, RhoGEF and PH domain-containing protein 5.	0.980
DR999_PMT00269	DR999_PMT04193	A0A4D9F931	A0A4D9EZ33	General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity.	Galectin-12.	0.968
DR999_PMT00269	DR999_PMT04364	A0A4D9F931	A0A4D9ELQ3	General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity.	Enhancer of polycomb-like protein 1.	0.873
DR999_PMT00269	DR999_PMT05267	A0A4D9F931	A0A4D9EL64	General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity.	Inhibitor of growth protein.	0.496
DR999_PMT00269	DR999_PMT07566	A0A4D9F931	A0A4D9EQH7	General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity.	Protein transport protein Sec23B.	0.908
DR999_PMT00269	DR999_PMT07657	A0A4D9F931	A0A4D9EPP6	General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity.	Inhibitor of growth protein.	0.498
DR999_PMT00269	DR999_PMT07947	A0A4D9F931	A0A4D9EFC1	General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity.	Outer dense fiber protein 2.	0.970