(15 nodes) Preribosome, large subunit precursor, and GTP-binding protein, orthogonal bundle domain superfamily network (Phaeodactylum tricornutum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PHATR_13281	60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family. (181 aa)
	B7FQ14_PHATC	Predicted protein. (801 aa)
	B7FR49_PHATC	Predicted protein. (110 aa)
	B7FS96_PHATC	Predicted protein. (671 aa)
	B7FSP6_PHATC	Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family. (499 aa)
	B7FSQ2_PHATC	Predicted protein. (360 aa)
	B7FTV8_PHATC	Predicted protein. (266 aa)
	B7FTY4_PHATC	Predicted protein. (668 aa)
	B7FXE3_PHATC	Predicted protein. (479 aa)
	B7FZV9_PHATC	Predicted protein. (290 aa)
	B7G005_PHATC	Predicted protein. (488 aa)
	B7G354_PHATC	Predicted protein. (348 aa)
	B7G3S8_PHATC	Predicted protein. (516 aa)
	B7GD92_PHATC	Protein MAK16 homolog; Belongs to the MAK16 family. (313 aa)
	B7GDR2_PHATC	Predicted protein. (662 aa)

Your Current Organism:

Phaeodactylum tricornutum

NCBI taxonomy Id: 556484
Other names: P. tricornutum CCAP 1055/1, Phaeodactylum tricornutum CCAP 1055/1

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B7FQ14_PHATC	B7FR49_PHATC	B7FQ14	B7FR49	Predicted protein.	Predicted protein.	0.995
B7FQ14_PHATC	B7FS96_PHATC	B7FQ14	B7FS96	Predicted protein.	Predicted protein.	0.999
B7FQ14_PHATC	B7FSP6_PHATC	B7FQ14	B7FSP6	Predicted protein.	Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family.	0.993
B7FQ14_PHATC	B7FSQ2_PHATC	B7FQ14	B7FSQ2	Predicted protein.	Predicted protein.	0.998
B7FQ14_PHATC	B7FTV8_PHATC	B7FQ14	B7FTV8	Predicted protein.	Predicted protein.	0.988
B7FQ14_PHATC	B7FTY4_PHATC	B7FQ14	B7FTY4	Predicted protein.	Predicted protein.	0.937
B7FQ14_PHATC	B7FXE3_PHATC	B7FQ14	B7FXE3	Predicted protein.	Predicted protein.	0.998
B7FQ14_PHATC	B7FZV9_PHATC	B7FQ14	B7FZV9	Predicted protein.	Predicted protein.	0.985
B7FQ14_PHATC	B7G005_PHATC	B7FQ14	B7G005	Predicted protein.	Predicted protein.	0.956
B7FQ14_PHATC	B7G354_PHATC	B7FQ14	B7G354	Predicted protein.	Predicted protein.	0.995
B7FQ14_PHATC	B7G3S8_PHATC	B7FQ14	B7G3S8	Predicted protein.	Predicted protein.	0.998
B7FQ14_PHATC	B7GD92_PHATC	B7FQ14	B7GD92	Predicted protein.	Protein MAK16 homolog; Belongs to the MAK16 family.	0.965
B7FQ14_PHATC	B7GDR2_PHATC	B7FQ14	B7GDR2	Predicted protein.	Predicted protein.	0.997
B7FQ14_PHATC	PHATR_13281	B7FQ14	B5Y3S4	Predicted protein.	60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family.	0.987
B7FR49_PHATC	B7FQ14_PHATC	B7FR49	B7FQ14	Predicted protein.	Predicted protein.	0.995
B7FR49_PHATC	B7FS96_PHATC	B7FR49	B7FS96	Predicted protein.	Predicted protein.	0.988
B7FR49_PHATC	B7FSP6_PHATC	B7FR49	B7FSP6	Predicted protein.	Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family.	0.997
B7FR49_PHATC	B7FSQ2_PHATC	B7FR49	B7FSQ2	Predicted protein.	Predicted protein.	0.999
B7FR49_PHATC	B7FTV8_PHATC	B7FR49	B7FTV8	Predicted protein.	Predicted protein.	0.993
B7FR49_PHATC	B7FTY4_PHATC	B7FR49	B7FTY4	Predicted protein.	Predicted protein.	0.994